Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1766 102 8e-17 seq1564 95.1 1e-14 seq593 93.3 4e-14 seq2313 89.7 5e-13 seq1344 89.7 5e-13 seq343 89.7 5e-13 seq2113 87.8 2e-12 seq1239 86.0 6e-12 seq717 82.4 8e-11 >seq1766 Length=5059 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| | ||| |||||||| || | | |||||||||||||| ||||||||||| Sbjct 4710 CCTCCTCTGAGACGTAAAACTAAGTGGAGAGTAGACTCCTTTTGAATATTGTAGTCGCTA 4769 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| | ||| || |||| | || || | |||||| || || || Sbjct 4770 AGTGTGCGTCCATCCTCTAATTGCTTTCCGGCGAAAATGAGTCTCTGTTGATCGGGTGGG 4829 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| || || ||||| |||| || | |||||| | |||||| Sbjct 4830 ATTCCCTCCTTGTCTTGTATCTTGGCTTTTACATTG-TCGATGGTGTCTGAGCTCTCCAC 4888 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | || || ||||||| ||| || || ||||||||||| Sbjct 4889 TTCGAGGGTGATTGTCTTTCCAGTCAAAGTCTTAACGAAAATCTGCAT 4936 >seq1564 Length=26684 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || ||| | || || || | | | |||||||| |||||||||||||| Sbjct 11824 CCTCCTCTCAGACGAAGGACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAG 11765 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || |||||| || || || |||| | | || || | ||||||||| || || Sbjct 11764 AGAGTGCGGCCGTCCTCAAGCTGCTTTCCGGCAAAAATAAGTCTCTGTTGGTCGGGGGGG 11705 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || ||||| | || | ||| || | ||| ||| Sbjct 11704 ATTCCCTCCTTGTCTTGGATCTTGGCTTTTACGTTGTCGATGGTATCAGAGCTCTCGACC 11645 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | || || ||||||| ||| || || || |||||||| Sbjct 11644 TCGAGGGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 11598 >seq593 Length=28782 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| | ||| || |||||||| | | || ||||| || |||||||||||||| Sbjct 15880 CCTCCTCTGAGACGTAAGACTAAATGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGCTT 15939 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | |||||| | ||| || |||| | || || | ||| || || || || Sbjct 15940 AAAGTTCTGCCGTCCTCTAATTGCTTTCCGGCGAAAATGAGTCTCTGCTGATCGGGTGGG 15999 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || |||||||| ||| || ||| | |||| || | ||| || | ||||| || Sbjct 16000 ATTCCCTCTTTGTCTTGGATCTTGGCTTTGACATTG-TCGATGGTATCTGAAGACTCGAC 16058 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||| |||||||| || ||||| ||||| Sbjct 16059 TTCTAAGGTAATTGTCTTGCCAGTGAGAGTTTTGACGAAAATTTGCAT 16106 >seq2313 Length=44285 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||||||||||||||||||||| | || | |||||| || || || |||| Sbjct 27838 GACTCCTTTTGAATGTTGTAGTCGCTGAGGGTTCTTCCGTCCTCTAGCTGCTTTCCGGCG 27779 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||||||||| || || || ||||| ||||| ||| || || | Sbjct 27778 AAGATGAGTCTCTGTTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATCTTAGCCTTGACG 27719 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | || || | || || || |||| || | || || ||||| || || ||| Sbjct 27718 TTGTCTATTGTATCTGAAGATTCAACTTCGAGGGTGATTGTCTTTCCAGTGAGGGTCTTT 27659 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 27658 ACGAAGATCTGCAT 27645 >seq1344 Length=40060 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| | ||| |||||||| || | | |||||||| || ||||| ||||| Sbjct 24210 CCTCCTCTGAGACGTAAAACTAAGTGGAGCGTGGACTCCTTCTGGATGTTATAGTCAGAG 24269 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| |||||||||||| || |||| | || || | ||||||||| || || Sbjct 24270 AGAGTACGTCCGTCCTCGAGTTGCTTTCCGGCGAAAATGAGTCTCTGTTGGTCGGGGGGG 24329 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| ||| |||| | || | ||| || | |||||| | || || | Sbjct 24330 ATTCCCTCCTTGTC-TTGAATTTTAGCCTTGACGTTG-TCGATGGTGTCTGAAGATTCTA 24387 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGC 138612 | |||| || | || || || || || || ||||| || || ||| Sbjct 24388 CTTCGAGGGTGATTGTCTTTCCTGTAAGTGTCTTTACGAAGATTTGC 24434 Score = 82.4 bits (90), Expect = 8e-11 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| | ||| | || || || | | | |||||||| ||||||||||||| || Sbjct 23982 CCTCCTCTGAGACGAAGTACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGT--CTG 24039 Query 138448 ATAGTACGCG--AGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505 | ||| ||| ||||| ||||| || |||| |||| || | ||||||||| || | Sbjct 24040 AGAGTGTGCGTCCATCCTCCAGTTGCTTTCCGGCGAAGATGAGTCTCTGTTGGTCGGGGG 24099 Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCC 138564 | || ||||| || || ||| || ||| | |||| || | ||||| | || || Sbjct 24100 GAATTCCTTCCTTATCTTGGATCTTGGCTTTAACATTG-TCGATAGTGTCTGAAGATTCG 24158 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || | || | || || || || |||||||| ||||| || ||||| Sbjct 24159 ACTTCCAAGGTGATTGTCTTGCCGGTGAGAGTTTTGACAAAGATTTGCAT 24208 >seq343 Length=26413 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| || | ||| | ||| | | |||||||| |||||||| ||||| Sbjct 302 CCTCCTCTCAAGCGAAGAACGAGATGAAGAGTAGACTCCTTCTGAATGTTATAGTCTGAG 243 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| |||||||| || || |||| | | || || | |||||| || || || Sbjct 242 AGGGTACGGCCATCCTCGAGCTGCTTTCCGGCAAAAATGAGTCTCTGTTGATCGGGTGGG 183 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||||||||| || || ||||| | || | ||||| | ||| || Sbjct 182 ATGCCTTCTTTGTCTTGTATCTTGGCTTTTACGTTGTCGATAGTGTCTGAACTCTCTACT 123 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | || || ||||||| ||| || || ||||||||||| Sbjct 122 TCGAGGGTGATTGTCTTTCCAGTCAAAGTCTTGACGAAAATCTGCAT 76 >seq2113 Length=21246 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || || ||||||||||| | ||| | |||||| || || || |||| Sbjct 20887 GACTCCTTCTGGATATTGTAGTCGCTGAGAGTTCTACCGTCCTCAAGCTGCTTTCCGGCG 20828 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTA 138538 | || || | ||||||||| || || || || || || || ||| | || | || Sbjct 20827 AAAATGAGTCTCTGTTGGTCGGGGGGGATTCCCTCCTTATC-TTGAATCTTGGCCTTCAC 20769 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | |||||||| ||||| ||||||| || | || || || |||| ||| | Sbjct 20768 ATTG-TCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTTCCGGTCAAAGTCT 20710 Query 138599 TTACAAAAATCTGCAT 138614 | || ||||| ||||| Sbjct 20709 TCACGAAAATTTGCAT 20694 >seq1239 Length=29077 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| || | ||| || || || | | |||||||| ||||||||||| || Sbjct 23116 CCTCCTCGTAATCTCAACACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCTGAG 23175 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || || || | || || || | | |||| || | ||||||||| ||||| Sbjct 23176 AGAGTGCGGCCATCTTCCAACTGCTTTCCAGCAAAGATGAGTCTCTGTTGGTCGGGAGGG 23235 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||| ||||| ||| || || | | || | |||||| | ||||||| Sbjct 23236 ATACCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCTGAGCTCTCCACC 23295 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || || ||||| || || ||||| |||||||| Sbjct 23296 TCCAAAGTGATGGTCTTTCCGGTCAGGGTCTTGACAAAGATCTGCAT 23342 >seq717 Length=13837 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| | ||| | ||| | || | | | ||||| ||||| |||||||||||| Sbjct 164 CCTCCTCTGAGACGAAGAACAAGGTGGAGGGTGGACTCTTTTTGGATGTTGTAGTCGGAG 223 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || ||| ||||| | || || |||| |||| | | |||||| || ||||| Sbjct 224 AGGGTGCGCCCATCCTCTAACTGCTTTCCGGCGAAGATCAATCTCTGTTGATCGGGAGGG 283 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| | || | || | | || | |||||||| ||||| || Sbjct 284 ATTCCTTCCTTGTC-TTGAATCTTGGCCTTGACGTTATCGATGGTGTCGGAGGACTCTAC 342 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | || || || || || || ||||| |||||||||||| Sbjct 343 TTCCAAAGTAATAGTCTTTCCTGTGAGGGTCTTTACGAAAATCTGCATG 391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496246414147440