Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1766 118 1e-21 seq2313 114 1e-20 seq717 114 1e-20 seq1044 113 4e-20 seq1239 105 6e-18 seq2113 98.7 9e-16 seq1564 98.7 9e-16 seq455 98.7 9e-16 seq593 95.1 1e-14 seq343 89.7 5e-13 >seq1766 Length=5059 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 || || || || || | |||||||| |||||||||||||| |||| | ||||| | Sbjct 4722 CGTAAAACTAAGTGGAGAGTAGACTCCTTTTGAATATTGTAGTCGCTAAGTGTGCGTCCA 4781 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || |||| || ||||| ||| | || | || ||| |||||||| || || ||||||||| Sbjct 4782 TCCTCTAATTGCTTTCCGGCGAAAATGAGTCTCTGTTGATCGGGTGGGATTCCCTCCTTG 4841 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 || || || || | | |||| |||||| | ||||| ||||||| ||| | Sbjct 4842 TCTTGTATCTTGGCTTTTACATTGTCGATGGTGTCTGAGCTCTCCACTTCGAGGGTGATT 4901 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || |||| ||| || || ||||||||||| Sbjct 4902 GTCTTTCCAGTCAAAGTCTTAACGAAAATCTGCAT 4936 >seq2313 Length=44285 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || |||||||| || || ||||| |||| | || | ||| || ||||| |||||| Sbjct 27613 GTGGACTCTTTCTGTATGTTGTAGTCGCTGAGGGTTCTTCCATCCTCCAGCTGCTTTCCA 27554 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | || ||| || || || ||||| |||||||| || ||| || ||| Sbjct 27553 GCGAAGATGAGTCTCTGTTGGTCTGGGGGTATTCCCTCCTTATCTTGGATCTTGGCCTTT 27494 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | ||||||||||| | || | || || ||||| | ||| Sbjct 27493 ACATTGTCGATGGTGTCTGAGCTCTCGACTTCCAAAGTGATGGTCTTTCCGGTTAAAGTC 27434 Query 127097 TTTACAAAAATCTGCATG 127114 |||||||||||||||||| Sbjct 27433 TTTACAAAAATCTGCATG 27416 >seq717 Length=13837 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||||||||| || ||||| ||| | ||||| ||| |||| ||| ||||| Sbjct 194 GTGGACTCTTTTTGGATGTTGTAGTCGGAGAGGGTGCGCCCATCCTCTAACTGCTTTCCG 253 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| ||||||||| ||| ||||||||||| || || |||||||| || || |||| Sbjct 254 GCGAAGATCAATCTCTGTTGATCGGGAGGGATTCCTTCCTTGTCTTGAATCTTGGCCTTG 313 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | ||| ||||| | || | || || || || || || Sbjct 314 ACGTTATCGATGGTGTCGGAGGACTCTACTTCCAAAGTAATAGTCTTTCCTGTGAGGGTC 373 Query 127097 TTTACAAAAATCTGCATG 127114 ||||| |||||||||||| Sbjct 374 TTTACGAAAATCTGCATG 391 >seq1044 Length=18651 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | ||||||||||| || || ||||| || | || ||||| ||| || Sbjct 18577 ACCAAGTGAAGGGTAGACTCTTTCTGTATGTTGTAGTCACTCAGTGTGCGTCCATCTTCC 18518 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 || || ||||||||| |||| | || ||| || ||||| || || ||||||||||| Sbjct 18517 AGTTGCTTTCCAGCGAAGATGAGTCTCTGTTGGTCGGGTGGGATTCCCTCCTTGTCTTGT 18458 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || || || | | |||| ||| || | |||||||||||| | || | || ||| Sbjct 18457 ATCTTGGCTTTTACATTATCGATGGTATCTGAACTCTCGACTTCCAATGTGATTGTCTTG 18398 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 ||||| || || ||||| || || |||||| Sbjct 18397 CCGGTGAGTGTCTTTACGAAGATTTGCATG 18368 >seq1239 Length=29077 Score = 105 bits (116), Expect = 6e-18 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 126896 AATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGA 126955 |||| |||||| | || | || |||||||| || |||||||| || | || | Sbjct 23353 AATCTCAACACGAGGTGAAGGGTGGACTCTTTCTGGATATTGTAGTCTGAGAGGGTCCTG 23412 Query 126956 GAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCC 127015 || || || || ||||| ||| | || | || || || |||||||| ||||||||| Sbjct 23413 CCGTCCTCGAGTTGCTTTCCGGCGAAAATGAGTCTTTGTTGGTCGGGAGGGATGCCCTCC 23472 Query 127016 TTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGT 127074 |||||| || || ||||| |||| |||| |||||| | ||||| || || | || Sbjct 23473 TTGTCCTGAATCTTGGCCTTGACGTTG-TCGATGGTGTCTGAGCTCTCCACCTCCAAAGT 23531 Query 127075 CACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 | || || ||||||| ||||||||||| ||||||||| Sbjct 23532 GATGGTCTTTCCGGTCAATGTTTTTACAAAGATCTGCATG 23571 >seq2113 Length=21246 Score = 98.7 bits (108), Expect = 9e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || |||||||| || | || || || || || || ||||| Sbjct 21118 GTGGACTCCTTCTGGATATTGTAGTCAGAGAGAGTACGTCCGTCCTCGAGTTGCTTTCCG 21059 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| ||||||||| || ||||| || || || ||||||||||| ||| ||| || Sbjct 21058 GCGAAGATCAATCTTTGTTGATCAGGGGGAATTCCCTCCTTGTCTTGGATCTTCGCTTTT 20999 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| |||||| | |||||||| |||| ||| | || || ||||| || || Sbjct 20998 ACGTTG-TCGATGGTGTCAGAGCTCTCGACCTCGAGGGTGATAGTCTTTCCGGTGAGGGT 20940 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 20939 CTTGACGAAGATCTGCAT 20922 >seq1564 Length=26684 Score = 98.7 bits (108), Expect = 9e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || |||||||| || | ||||| || || ||||| |||||| Sbjct 12022 GTGGACTCCTTCTGGATATTGTAGTCAGAGAGAGTGCGGCCGTCCTCGAGCTGCTTTCCA 11963 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | || ||| || ||||| || || ||||||||||| ||| || |||| Sbjct 11962 GCGAAGATGAGTCTCTGTTGGTCGGGGGGGATTCCCTCCTTGTCTTGGATCTTAGCCTTG 11903 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| |||||| | ||| ||||| | || | || |||||||| || || Sbjct 11902 ACGTTG-TCGATGGTGTCGGAGGACTCCACTTCCAAAGTGATGGTCTTGCCGGTGAGGGT 11844 Query 127096 TTTTACAAAAATCTGCAT 127113 || ||||| || ||||| Sbjct 11843 CTTGACAAAGATTTGCAT 11826 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | || ||||| || ||||| ||||| || | ||||| || || Sbjct 11806 ACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGGCCGTCCTCA 11747 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 ||||| ||||| || | || | || ||| || ||||| || || ||||||||||| | Sbjct 11746 AGCTGCTTTCCGGCAAAAATAAGTCTCTGTTGGTCGGGGGGGATTCCCTCCTTGTCTTGG 11687 Query 127025 ATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 || || || | |||| |||| ||| || | |||||||| |||| ||| | || || Sbjct 11686 ATCTTGGCTTTTACGTTG-TCGATGGTATCAGAGCTCTCGACCTCGAGGGTGATGGTCTT 11628 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| ||| || || || |||||||| Sbjct 11627 TCCAGTCAAAGTCTTGACGAAGATCTGCAT 11598 >seq455 Length=31299 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 47370 GAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATG 47429 |||| ||||||| || |||||||| |||| | | | | ||||||||||| | || Sbjct 8491 GAGAAGGAGTTTGTCACCGAGGCTTTGCCAGTTGGTCTGATTGGAATGAACGCCAACCTG 8432 Query 47430 ATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAG 47489 |||| | |||| ||||| ||||||||||| | |||||||| || |||| |||||| Sbjct 8431 ATGACACAGTATATCGAGTTTGTCGCCGATAGACTGCTCGTCGCCCTCAAGTGCCCCAAG 8372 Query 47490 ATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACC 47549 | ||| ||||||| || || || | ||| | ||| || || | || |||||| Sbjct 8371 CACTTCCATGCCGAGAACCCCTTTGATTGGATGGTCCTCATCTCTCTGCAAGGAAAGACC 8312 Query 47550 AACTTTTTCGAG 47561 ||||| || ||| Sbjct 8311 AACTTCTTTGAG 8300 >seq593 Length=28782 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || || |||||||| ||| | || || || || ||||| ||||| Sbjct 15682 GTAGACTCCTTCTGGATATTGTAGTCGGAAAGAGTACGTCCGTCCTCAAGCTGCTTTCCG 15741 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | || ||| |||||||| || || || |||||||| || || ||| Sbjct 15742 GCAAAGATGAGTCTCTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGAATCTTGGCCTTC 15801 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | ||||| | |||||| ||||||| ||| | || || || |||| ||| Sbjct 15802 ACATTATCTATAGTGTCTGAACTCTCTACTTCGAGGGTGATTGTCTTTCCTGTCAAAGTC 15861 Query 127097 TTTACAAAAATCTGCAT 127113 || || ||||||||||| Sbjct 15862 TTGACGAAAATCTGCAT 15878 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 || || || ||||| | || || || || || || ||||| |||| | || | Sbjct 15892 CGTAAGACTAAATGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGCTTAAAGTTCTGCCG 15951 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || |||| || ||||| ||| | || | || |||||||||||| || || ||||| ||| Sbjct 15952 TCCTCTAATTGCTTTCCGGCGAAAATGAGTCTCTGCTGATCGGGTGGGATTCCCTCTTTG 16011 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 || ||| || |||| | |||| ||| || | | ||||||||| | ||| | Sbjct 16012 TCTTGGATCTTGGCTTTGACATTGTCGATGGTATCTGAAGACTCGACTTCTAAGGTAATT 16071 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| || |||||||| || ||||| ||||| Sbjct 16072 GTCTTGCCAGTGAGAGTTTTGACGAAAATTTGCAT 16106 >seq343 Length=26413 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || ||||| || || || | || || ||| || ||||| ||||| Sbjct 272 GTAGACTCCTTCTGAATGTTATAGTCTGAGAGGGTACGGCCATCCTCGAGCTGCTTTCCG 213 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || | || | || ||| |||||||| || ||||| || ||||| || || || Sbjct 212 GCAAAAATGAGTCTCTGTTGATCGGGTGGGATGCCTTCTTTGTCTTGTATCTTGGCTTTT 153 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | ||||| ||| ||||| | |||||| ||||||| ||| | || || || |||| ||| Sbjct 152 ACGTTGT-CGATAGTGTCTGAACTCTCTACTTCGAGGGTGATTGTCTTTCCAGTCAAAGT 94 Query 127096 TTTTACAAAAATCTGCAT 127113 || || ||||||||||| Sbjct 93 CTTGACGAAAATCTGCAT 76 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475485482930480