Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq593 131 2e-25 seq2113 109 5e-19 seq1024 109 5e-19 seq2313 102 7e-17 seq1344 95.1 1e-14 seq1239 89.7 5e-13 >seq593 Length=28782 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | ||| | || |||| ||| || || |||||||| ||||| || || ||| Sbjct 15877 ATTCCTCCTCTGAGACGTAAGACTAAATGGAGAGTCGATTCCTTCTGGATGTTGTAGTCG 15936 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || | ||| | || || ||||| ||||| ||| | || | || ||||| || || Sbjct 15937 CTTAAAGTTCTGCCGTCCTCTAATTGCTTTCCGGCGAAAATGAGTCTCTGCTGATCGGGT 15996 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || ||||| ||||| || || ||||| || | ||| || ||||||||| Sbjct 15997 GGGATTCCCTCTTTGTCTTGGATCTTGGCTTTGACATTGTCGATGGTATCTGAAGACTCG 16056 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | |||| || ||||| || |||||||| || ||||||||||| Sbjct 16057 ACTTCTAAGGTAATTGTCTTGCCAGTGAGAGTTTTGACGAAAATTTGCAT 16106 Score = 89.7 bits (98), Expect = 5e-13 Identities = 95/123 (77%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 45219 TGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGT 45277 || ||||| || || ||||||||||| ||||| | | || | || | || | || | || Sbjct 28310 TGTTGGTCGGGTGGGATGCCTTCTTTGTCTTGTA-TCTTGGCTTTAACGTTGTCGATTGT 28368 Query 45278 GTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTG 45337 || ||||||||||| ||||| || | || |||||||| ||||| || ||||||||||| Sbjct 28369 ATCTGAAGACTCGACCTCGAGTGTGATTGTCTTGCCGGTGAGAGTCTTGACAAAAATTTG 28428 Query 45338 CAT 45340 ||| Sbjct 28429 CAT 28431 >seq2113 Length=21246 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | || | | || || || || || || ||||| |||||||| || ||| Sbjct 20923 ATTCCTCCTCTCAGACGAAGTACAAGGTGAAGAGTGGACTCCTTCTGGATATTGTAGTCG 20864 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 |||| ||| || || || | || ||||| ||| | || | || || ||||| || Sbjct 20863 CTGAGAGTTCTACCGTCCTCAAGCTGCTTTCCGGCGAAAATGAGTCTCTGTTGGTCGGGG 20804 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || || ||||||||||| || || | || | ||||||||| |||||| Sbjct 20803 GGGATTCCCTCCTTATCTTGAATCTTGGCCTTCACATTGTCGATGGTGTCGGAGGACTCG 20744 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || | || || ||||| | ||| || || ||||||||||| Sbjct 20743 ACCTCGAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAAATTTGCAT 20694 >seq1024 Length=14032 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | || | || || | || || || |||||||| ||||| ||||| ||| Sbjct 14010 ATTCCTCCTCTAAGACGTAATACCAAGTGGAGAGTCGATTCCTTCTGGATGTTATAGTCG 13951 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || | ||| | || ||||| || ||||| ||| | || | || || ||||| || Sbjct 13950 CTCAAAGTTCTGCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGTCTCTGTTGGTCGGGT 13891 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || ||||| ||||| || || ||||| || | ||| || ||||||||| Sbjct 13890 GGGATTCCCTCTTTGTCTTGGATCTTGGCTTTGACATTGTCGATGGTATCTGAAGACTCG 13831 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || |||| || || || || || || ||||| || |||||||| Sbjct 13830 ACCTCAAGTGTAATTGTCTTTCCTGTGAGTGTCTTTACGAAGATTTGCAT 13781 >seq2313 Length=44285 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| | ||| | | || || || ||||| || |||||||| || || || |||||| Sbjct 27871 CCTCCTCTGAGACGAAGAACAAGGTGGAGCGTGGACTCCTTTTGAATGTTGTAGTCGCTG 27812 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | |||| | || || | || ||||| ||| | || | || || ||||| || ||| Sbjct 27811 AGGGTTCTTCCGTCCTCTAGCTGCTTTCCGGCGAAGATGAGTCTCTGTTGGTCTGGTGGA 27752 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 |||||||| || ||||| || || |||| || | |||| || || ||||| || || Sbjct 27751 ATGCCTTCCTTGTCTTGGATCTTAGCCTTGA-CGTTGTCTATTGTATCTGAAGATTCAAC 27693 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||| || | || || || || || || ||||| || || ||||| Sbjct 27692 TTCGAGGGTGATTGTCTTTCCAGTGAGGGTCTTTACGAAGATCTGCAT 27645 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | ||| | | || || || || || || || || || || || || ||| Sbjct 27646 ATTCCTCCTCTGAGACGAAGAACAAGGTGGAGTGTGGACTCTTTCTGTATGTTGTAGTCG 27587 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 |||| |||| | ||| |||| || ||||| ||| | || | || || ||||| || Sbjct 27586 CTGAGGGTTCTTCCATCCTCCAGCTGCTTTCCAGCGAAGATGAGTCTCTGTTGGTCTGGG 27527 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || || |||||||| || || || | || | |||||| || |||| Sbjct 27526 GGTATTCCCTCCTTATCTTGGATCTTGGCCTTTACATTGTCGATGGTGTCTGAGCTCTCG 27467 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||| | || || ||||||| ||| ||||||||||| ||||| Sbjct 27466 ACTTCCAAAGTGATGGTCTTTCCGGTTAAAGTCTTTACAAAAATCTGCAT 27417 >seq1344 Length=40060 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | ||| | || |||| || ||||| || ||||| ||||| ||||| || Sbjct 24207 ATTCCTCCTCTGAGACGTAAAACTAAGTGGAGCGTGGACTCCTTCTGGATGTTATAGTCA 24266 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || || || || | ||| ||||| ||| | || | || || ||||| || Sbjct 24267 GAGAGAGTACGTCCGTCCTCGAGTTGCTTTCCGGCGAAAATGAGTCTCTGTTGGTCGGGG 24326 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || || || || ||||||||||| |||| || | || | |||||| ||||| || Sbjct 24327 GGGATTCCCTCCTTGTCTTGAATTTTAGCCTTGA-CGTTGTCGATGGTGTCTGAAGATTC 24385 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGC 45338 |||||||| || | || || || || || || ||||| || |||||| Sbjct 24386 TACTTCGAGGGTGATTGTCTTTCCTGTAAGTGTCTTTACGAAGATTTGC 24434 >seq1239 Length=29077 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | | |||||||| || || || || || || || |||||||| || || Sbjct 23341 ATTCCTCCTCTCAATCTCAACACGAGGTGAAGGGTGGACTCTTTCTGGATATTGTAGTCT 23400 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| | || || | ||| ||||| ||| | || | || ||| ||||| || Sbjct 23401 GAGAGGGTCCTGCCGTCCTCGAGTTGCTTTCCGGCGAAAATGAGTCTTTGTTGGTCGGGA 23460 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || ||||| || || || ||||| || |||| || | || | |||||| || ||| Sbjct 23461 GGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGA-CGTTGTCGATGGTGTCTGAGCTCTC 23519 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | ||| | || || ||||| | ||||||||||| || ||||| Sbjct 23520 CACCTCCAAAGTGATGGTCTTTCCGGTCAATGTTTTTACAAAGATCTGCAT 23570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451988639846920