Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1441 125 9e-24 seq455 105 8e-18 >seq1441 Length=33442 Score = 125 bits (138), Expect = 9e-24 Identities = 295/443 (67%), Gaps = 7/443 (2%) Strand=Plus/Minus Query 116842 TCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTG 116901 |||||||| || |||| || || ||||| || ||||| || || || | | ||||| Sbjct 2009 TCCAAAAACTCGGTGATGTCGGCATGCCATGGCTCCAGATAAACGGCAAAGGCACCCTTC 1950 Query 116902 CG---ACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGA 116958 | || ||| | |||| ||||| | || || | || || || | |||||| || Sbjct 1949 CTCTTACCACCTCCTTGGTCGACATAACGTGCAGTGTCATTGAAGACTCTAAGCATGGGG 1890 Query 116959 ATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTG--GCTCTGACAT 117016 | || |||| ||| |||||||| || | || | ||| || ||||||| | Sbjct 1889 ACGAGTCCATTAGAGGCACCATTTGTTCCTCTGAT--GTAACTGTCTGCAGCTCTGATCT 1832 Query 117017 CGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGAC 117076 |||| || ||| || || || || | || ||||| | ||||||| | | ||| Sbjct 1831 TGTGGGCAGACAGACCGATGCCTCCGGCAGATTTAGAGATGAGAGCGCACTGCTTTAGAG 1772 Query 117077 TGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTT 117136 || ||||||| || ||||| || || |||| | | | ||||||||| ||||| | Sbjct 1771 TGTCGTAGATACCCTCGATAGAATCCTCCTTCATGTCCAAAAGGAAGCAGGAAGACATCT 1712 Query 117137 GTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGG 117196 | || |||||||| |||| |||||| || || ||||| ||||| |||| | ||||| Sbjct 1711 GAGGTCTTGGTGTGCCAGAGTTGAAAAGTGTGGGTGTGGCGTGTGTGAAAAACAGTTGGG 1652 Query 117197 ACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGA 117256 | | | || || || || | | ||| |||||| | ||||||||||| || | Sbjct 1651 ATAACAGATGATATGTTTCGATGGCAGCTTTGATGTCTCTCTTGTGAATACCGACAGACA 1592 Query 117257 CCCGCATAAACATGTATTGGGGT 117279 | | | ||| | || ||||||| Sbjct 1591 CTCTGAGAAAGAGGTGTTGGGGT 1569 Score = 120 bits (132), Expect = 4e-22 Identities = 132/176 (75%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 116410 TCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTA 116469 || |||||| |||| || |||||||| || |||||||| ||||| | |||||||| Sbjct 2488 TCCTTGACAAACTTGGGCAGGGCGATGGATGCCAGATTGCACACCGCAACCTCATCCTGC 2429 Query 116470 TCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTT 116529 |||||||||| ||||| || || ||||| || | ||| ||||| || | ||||| | Sbjct 2428 GCAGTGTACTCCATAATCTCGGTGCACAAGTTGCTAGACTTGATGGTTCCGAGGTTCTGT 2369 Query 116530 TGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTC 116585 || || |||| |||| || ||||||||||||||||| || || || ||||| Sbjct 2368 TGGTTGCTCTTTCTGTTGGCGGCGTCCTTGTAGAGCATATAAGGTGTTCCGGTCTC 2313 >seq455 Length=31299 Score = 105 bits (116), Expect = 8e-18 Identities = 197/285 (69%), Gaps = 11/285 (4%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || |||||| || ||||| || || || | ||| || || | | |||||| Sbjct 8571 GCAAAGTCGCAGTGGAGTCCTTCGTCGCGAGAAATAAATTCGTTTGATGTGGAAAGACCT 8630 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||||||||| | |||||||||||| || || | ||| || || |||||||||||||| Sbjct 8631 GGCATGAGACCTCTCTTCTTCAACCAAAAGATGGAACAGAAGGAACCAGAGAAGAAGATG 8690 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGA--CTTTGTATCAA 127697 ||||| || ||||| || | || || || | || ||| ||| | ||| ||| | Sbjct 8691 CCCTCTACGGCAGCGAAAGCGACGAGGCGTTCTCCGAAAGAGTCGGAATCATTG-ATCCA 8749 Query 127698 ACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAA 127757 | | | ||||| | ||||| || | ||| || |||| | | ||| || | | Sbjct 8750 GCGA----AGAGCCCAGTCCGCCTTCTTTTTGATGCAGGGGATGTGGTCGATGGCATGGA 8805 Query 127758 AGAG--TTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTAT 127800 |||| || | ||| || | || || ||||||||| | ||||| Sbjct 8806 AGAGCATTGC--CTTCTCGGTGGGGTCCTTGATGTACGTGTCTAT 8848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613487437399320