Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1564 150 2e-31 seq1239 125 8e-24 seq1378 116 4e-21 seq1344 100 3e-16 seq717 98.7 1e-15 seq2113 96.9 4e-15 seq593 91.5 2e-13 seq1766 82.4 9e-11 >seq1564 Length=26684 Score = 150 bits (166), Expect = 2e-31 Identities = 176/235 (75%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 46361 TATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAG 46420 || || |||||||| | ||| | ||| || || | || |||||| |||||||||||| Sbjct 12058 TAGTTTCCTCCTCTGAGACGGAGCACAAGGTGAAGAGTGGACTCCTTCTGGATATTGTAG 11999 Query 46421 TCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCG 46480 || || |||||||| |||| ||||||||||| || ||||| || | | ||| |||||| Sbjct 11998 TCAGAGAGAGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATGAGTCTCTGTTGGTCG 11939 Query 46481 GCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCC-ACCGTGTCGCTCGA 46539 | || | | ||||||||| |||||| ||||| ||| | | | |||||| || Sbjct 11938 GGGGGGATTCCCTCCTTGTCTTGGATCTTAGCCTTGA-CGTTGTCGATGGTGTCGGAGGA 11880 Query 46540 TTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 ||||| |||| |||||||| ||||| || || || || ||||||||||||||| Sbjct 11879 CTCCACTTCCAAAGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATTTGCATT 11825 >seq1239 Length=29077 Score = 125 bits (138), Expect = 8e-24 Identities = 171/235 (73%), Gaps = 8/235 (3%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| || | |||||| || || | || ||| || |||||||||||||| || Sbjct 23344 CCTCCTCTCAATCTCAACACGAGGTGAAGGGTGGACTCTTTCTGGATATTGTAGTCTGAG 23403 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || | |||| ||||| ||||| |||||||| || | | || ||||||| || Sbjct 23404 AGGGTCCTGCCGTCCTCGAGTTGCTTTCCGGCGAAAATGAGTCTTTGTTGGTCGGGAGGG 23463 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 46542 | || |||||||||| ||||| ||||| ||| | | | ||||| |||| || Sbjct 23464 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGA-CGTTGTCGATGGTGTCTGAGCTC---TC 23519 Query 46543 CACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 ||| |||| |||||||| || || |||| ||||| |||||||| ||||| ||| Sbjct 23520 CACCTCCAAAGTGATGGTCTTTCCGGTCAATGTTTTTACAAAGATCTGCATGTTG 23574 >seq1378 Length=10532 Score = 116 bits (128), Expect = 4e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||||||||| | ||| || ||||| |||||| |||||| || || || ||||| | Sbjct 10469 TGCCTCCTCTTAATCTCAATACAAGATGTAATGTAGACTCCTTCTGAATGTTATAGTCTG 10410 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || || || | || ||||||||||| ||||| || || | | ||| ||||||| | Sbjct 10409 AGAGGGTACGGCCATCCTCGAGCTGCTTTCCGGCAAAGATGAGTCTCTGTTGGTCGGGGG 10350 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | |||||||| |||||| ||||| | | | ||||| ||||| | Sbjct 10349 GAATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTATCGATGGTGTCAGATGATTCGA 10290 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 | || | |||||||| || || || || || || || ||||| ||||| || Sbjct 10289 CCTCTAAGGTGATGGTCTTTCCGGTGAGAGTCTTCACGAAGATCTGCATGTT 10238 >seq1344 Length=40060 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| | ||| | |||| || | || |||||| || || |||||||| || Sbjct 23982 CCTCCTCTGAGACGAAGTACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCTGAG 24041 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || || ||||| |||||||| || | | ||| ||||||| || Sbjct 24042 AGTGTGCGTCCATCCTCCAGTTGCTTTCCGGCGAAGATGAGTCTCTGTTGGTCGGGGGGA 24101 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCAC 46545 | | ||||| || |||||| ||| | | | | | | ||||| ||||| || Sbjct 24102 ATTCCTTCCTTATCTTGGATCTTGG-CTTTAACATTGTCGATAGTGTCTGAAGATTCGAC 24160 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||| ||||| || ||||| || || ||||| ||||||||||||||| Sbjct 24161 TTCCAAGGTGATTGTCTTGCCGGTGAGAGTTTTGACAAAGATTTGCATT 24209 >seq717 Length=13837 Score = 98.7 bits (108), Expect = 1e-15 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| | ||| | || || || | || ||| |||||||| ||||||||||| Sbjct 164 CCTCCTCTGAGACGAAGAACAAGGTGGAGGGTGGACTCTTTTTGGATGTTGTAGTCGGAG 223 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || |||||| | || || | |||||| |||||||| ||||| | ||| || |||| || Sbjct 224 AGGGTGCGCCCATCCTCTAACTGCTTTCCGGCGAAGATCAATCTCTGTTGATCGGGAGGG 283 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | |||||||| ||||| ||||| | | | |||||| || || || Sbjct 284 ATTCCTTCCTTGTCTTGAATCTTGGCCTTGACGTTATCGATGGTGTCGGAGGACTCTACT 343 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGC 46598 |||| || || || || || || || || || || || || ||||| |||| Sbjct 344 TCCAAAGTAATAGTCTTTCCTGTGAGGGTCTTTACGAAAATCTGCATGTTGC 395 >seq2113 Length=21246 Score = 96.9 bits (106), Expect = 4e-15 Identities = 163/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| | ||| | || || || | || |||||| |||||||||||||| || Sbjct 21148 CCTCCTCTGAGACGGAGGACGAGGTGAAGAGTGGACTCCTTCTGGATATTGTAGTCAGAG 21089 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| || |||| ||||| ||||| |||||||| ||||| | || || || | || Sbjct 21088 AGAGTACGTCCGTCCTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGTTGATCAGGGGGA 21029 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 46542 | | ||||||||| ||||||| ||| ||| | | | ||||| |||| || Sbjct 21028 ATTCCCTCCTTGTCTTGGATCTTC-GCTTTTACGTTGTCGATGGTGTCAGAGCTC---TC 20973 Query 46543 CACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || || | ||||| || || || || || || || || ||||| |||||| Sbjct 20972 GACCTCGAGGGTGATAGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCATT 20921 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| | ||| | || || || | || |||||| ||||||||||||||| Sbjct 20920 CCTCCTCTCAGACGAAGTACAAGGTGAAGAGTGGACTCCTTCTGGATATTGTAGTCGCTG 20861 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| | |||| || |||||||| |||||||| || | | ||| ||||||| || Sbjct 20860 AGAGTTCTACCGTCCTCAAGCTGCTTTCCGGCGAAAATGAGTCTCTGTTGGTCGGGGGGG 20801 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | |||||| || ||||| ||| | | | | |||||| || || || Sbjct 20800 ATTCCCTCCTTATCTTGAATCTTGGCCTTCACATTGTCGATGGTGTCGGAGGACTCGACC 20741 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || | |||||||| || || |||| || || || || ||||||||| Sbjct 20740 TCGAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAAATTTGCATT 20693 >seq593 Length=28782 Score = 91.5 bits (100), Expect = 2e-13 Identities = 162/235 (69%), Gaps = 6/235 (3%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | ||| || |||| ||| | ||| |||||| ||||| ||||| ||| Sbjct 16108 CCACCTCTAAGACGTAATACCAAATGGAGAGTAGACTCCTTCTGGATGTTGTAATCGCTC 16167 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | |||||| |||| || | |||||| |||||||| || | | ||| || |||| || Sbjct 16168 AAAGTGCGGCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGTCTCTGTTGATCGGGTGGG 16227 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCG---CTCGATTCC 46543 | | |||||||| |||||| ||| | | | | ||||| ||| ||| Sbjct 16228 ATTCCTTCCTTGTCTTGGATCTTGGCCTTTACATTATCGATTGTGTCTGAACTC---TCC 16284 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGC 46598 || || | ||||| || || || || || || ||||| ||||||||||| |||| Sbjct 16285 ACTTCGAGTGTGATTGTCTTTCCAGTTAGTGTCTTAACGAAGATTTGCATGTTGC 16339 Score = 89.7 bits (98), Expect = 6e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| | ||| | || ||||| | ||| |||||| ||||||||||||||||| Sbjct 15652 CCTCCTCTGAGACGGAGGACGAGATGAAGAGTAGACTCCTTCTGGATATTGTAGTCGGAA 15711 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| || |||| || |||||||| ||||| || || | | ||| || |||| || Sbjct 15712 AGAGTACGTCCGTCCTCAAGCTGCTTTCCGGCAAAGATGAGTCTCTGTTGATCGGGTGGG 15771 Query 46487 ACGCTCTCCTTGTC 46500 | | |||||||| Sbjct 15772 ATTCCTTCCTTGTC 15785 >seq1766 Length=5059 Score = 82.4 bits (90), Expect = 9e-11 Identities = 160/233 (69%), Gaps = 10/233 (4%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| | ||| || || | || | ||| ||||||||| |||||||||||| Sbjct 4710 CCTCCTCTGAGACGTAAAACTAAGTGGAGAGTAGACTCCTTTTGAATATTGTAGTCGCTA 4769 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || | ||||| |||||||| || | | ||| || |||| || Sbjct 4770 AGTGTGCGTCCATCCTCTAATTGCTTTCCGGCGAAAATGAGTCTCTGTTGATCGGGTGGG 4829 Query 46487 ACGCTCTCCTTGTCCATGATCTT--CTTCTTGAGCGTCGCCACCGTGTC---GCTCGATT 46541 | | ||||||||| ||||| ||| | | |||| | ||||| |||| | Sbjct 4830 ATTCCCTCCTTGTCTTGTATCTTGGCTTTTACATTGTCG--ATGGTGTCTGAGCTC---T 4884 Query 46542 CCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||| || | ||||| || || || |||| || ||||| || || |||||| Sbjct 4885 CCACTTCGAGGGTGATTGTCTTTCCAGTCAAAGTCTTAACGAAAATCTGCATT 4937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565220192258040