Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq1766 102 3e-16 seq2113 98.7 4e-15 seq1344 98.7 4e-15 seq593 87.8 7e-12 >seq1766 Length=5059 Score = 102 bits (112), Expect = 3e-16 Identities = 165/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||||||||| || ||||||| || || || || || || || || || Sbjct 4937 AATGCAGATTTTCGTTAAGACTTTGACTGGAAAGACAATCACCCTCGAAGTGGAGAGCTC 4878 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | ||| || | | ||| || || ||||| ||||| ||||| || || ||||| Sbjct 4877 AGACACCATCGACAATGTAAAAGCCAAGATACAAGACAAGGAGGGAATCCCACCCGATCA 4818 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAAC-TTTGGCGGATTATA 391227 ||| | | |||||| | || || ||| | || |||||| | || || || || || | Sbjct 4817 ACAGAGACTCATTTTCGCCGGAAAGCAATTAGAGGATGGACGCACACTTAGC-GACTACA 4759 Query 391228 ATATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGATAAATACA 391282 ||||| | ||||| | || || |||||||| ||| | || |||||| ||| || Sbjct 4758 ATATTCAAAAGGAGTCTACTCTCCACTTAGTTTTACGTCTCAGAGGAGGAATGCA 4704 >seq2113 Length=21246 Score = 98.7 bits (108), Expect = 4e-15 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | |||||||| || || |||| || || || || || || || || || || || Sbjct 20693 AATGCAAATTTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTCGAGGTCGAGTCCTC 20752 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | ||| || | | || || |||||||||||||| ||||| || || || || Sbjct 20753 CGACACCATCGACAATGTGAAGGCCAAGATTCAAGATAAGGAGGGAATCCCCCCCGACCA 20812 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||| | | |||||| | || || || ||||| || || |||||| | || || || Sbjct 20813 ACAGAGACTCATTTTCGCCGGAAAGCAGCTTGAGGACGGTAGAACTCTCAGCGACTACAA 20872 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGATAAATACA 391282 ||| | ||||| | || |||||| | ||| | | ||||||||| ||| || Sbjct 20873 TATCCAGAAGGAGTCCACTCTTCACCTTGTACTTCGTCTGAGAGGAGGAATGCA 20926 Score = 93.3 bits (102), Expect = 2e-13 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || ||||| || || || || || || ||||| || || || || || || Sbjct 20921 AATGCAGATCTTCGTCAAGACCCTCACCGGAAAGACTATCACCCTCGAGGTCGAGAGCTC 20980 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||| | ||| || | ||| || || ||||| ||||| |||||||| |||||||| Sbjct 20981 TGACACCATCGACAACGTAAAAGCGAAGATCCAAGACAAGGAGGGAATTCCCCCTGATCA 21040 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 |||| | || || ||| | || || ||||| || || ||| | ||| | | || || || Sbjct 21041 ACAAAGATTGATCTTCGCCGGAAAGCAACTCGAGGACGGACGTACTCTCTCTGACTACAA 21100 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGATAAATACA 391282 ||| | ||||| | || |||||| | || | | || |||||| ||| || Sbjct 21101 TATCCAGAAGGAGTCCACTCTTCACCTCGTCCTCCGTCTCAGAGGAGGAATGCA 21154 >seq1344 Length=40060 Score = 98.7 bits (108), Expect = 4e-15 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || || ||||| || || || || || || || | || || ||||| || Sbjct 24209 AATGCAAATCTTTGTCAAAACTCTCACCGGCAAGACAATCACCTTGGAAGTCGAATCTTC 24150 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | || || | ||||| || || |||||||||||||||||||| || || || Sbjct 24149 AGACACTATCGACAATGTTAAAGCCAAGATCCAAGATAAGGAAGGAATTCCCCCCGACCA 24090 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||| | | || ||| | || || ||||| || |||||| | || | | || || || Sbjct 24089 ACAGAGACTCATCTTCGCCGGAAAGCAACTGGAGGATGGACGCACACTCTCAGACTACAA 24030 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGATAAATACA 391282 ||| | ||||| | || |||||||| ||| | | || |||||| ||| || Sbjct 24029 CATTCAGAAGGAGTCCACCCTTCACTTGGTACTTCGTCTCAGAGGAGGAATGCA 23976 Score = 98.7 bits (108), Expect = 4e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 391056 ATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAAC 391115 || ||||| || ||||| || || || || || || || || || ||||| || || | | Sbjct 24430 ATCTTCGTAAAGACACTTACAGGAAAGACAATCACCCTCGAAGTAGAATCTTCAGACACC 24371 Query 391116 ATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGT 391175 || || | || ||||||||||| ||||| ||||| || || || ||||| | Sbjct 24370 ATCGACAACGTCAAGGCTAAAATTCAAGACAAGGAGGGAATCCCCCCCGACCAACAGAGA 24311 Query 391176 TTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGAT 391235 | |||||| | || || ||||| || || ||| | ||| | | || ||||| || | Sbjct 24310 CTCATTTTCGCCGGAAAGCAACTCGAGGACGGACGTACTCTCTCTGACTATAACATCCAG 24251 Query 391236 AAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGATAAATACA 391282 ||||| | || || |||||||| ||| | || |||||| ||| || Sbjct 24250 AAGGAGTCCACGCTCCACTTAGTTTTACGTCTCAGAGGAGGAATGCA 24204 >seq593 Length=28782 Score = 87.8 bits (96), Expect = 7e-12 Identities = 164/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || ||||| || || || ||||| || || || || || || || || || Sbjct 28660 AATGCAAATCTTCGTCAAGACCCTCACTGGAAAGACAATCACACTCGAAGTAGAGAGCTC 28601 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 |||| ||| || | | ||| || || ||||| |||||||||||||| |||||||| Sbjct 28600 AGATACCATCGACAATGTAAAAGCCAAGATACAAGACAAGGAAGGAATTCCCCCTGATCA 28541 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||| | | || ||| | || || ||| | || || || |||| | | || ||||| Sbjct 28540 ACAGAGACTCATCTTCGCCGGAAAGCAATTAGAGGACGGCCGAACCCTCTCAGACTATAA 28481 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGATAAATACAtttttt 391288 ||| | ||||| | || ||||| | || | | || |||||| ||| || |||| Sbjct 28480 CATTCAGAAGGAGTCTACTCTTCATCTGGTTCTTCGTCTCAGAGGAGGAATGCAAATTTT 28421 Query 391289 t 391289 | Sbjct 28420 T 28420 Score = 86.0 bits (94), Expect = 2e-11 Identities = 154/225 (68%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || ||||| || || || || || || || | || || ||||| || Sbjct 15650 ATGCAGATTTTTGTCAAAACTCTCACCGGCAAGACCATCACCTTAGAAGTAGAATCCTCA 15591 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || || | |||| || |||||||| ||||||||||| ||||| || ||| Sbjct 15590 GATACTATCGACAATGTTAAGGCCAAGATTCAAGACAAGGAAGGAATCCCTCCCGACCAA 15531 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | | ||||| | || || || ||||| || || |||||| | | || || || Sbjct 15530 CAGAGACTCATTTTTGCCGGAAAGCAGCTTGAGGACGGCAGAACTCTTTCTGACTACAAC 15471 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGA 391274 || | || || | || |||||| | || | | || |||||| Sbjct 15470 ATCCAGAAAGAATCTACTCTTCACCTTGTCCTGCGTCTTAGAGGA 15426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975653166100316