Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq1561 107 1e-17 seq2048 91.5 1e-12 >seq1561 Length=19091 Score = 107 bits (118), Expect = 1e-17 Identities = 103/132 (78%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 518174 AGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCA 518233 |||||| | |||| |||||| || ||||| || |||||||| | |||| | ||| Sbjct 5149 AGACCAAAGGCAAGAGCAGCGGCGGTTGGCTCGTTAATAATACGTTCGACATCGAAACCG 5090 Query 518234 GCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACA 518293 || ||||||||||| || || |||||||||||||| |||||||| || |||||||| || Sbjct 5089 GCGATTCTTCCTGCGTCCTTTGTGGCTTGTCTTTGGGAATCGTTGAAGTATGCAGGGACG 5030 Query 518294 GTAATAACGGCA 518305 || || || ||| Sbjct 5029 GTGATGACAGCA 5018 >seq2048 Length=17775 Score = 91.5 bits (100), Expect = 1e-12 Identities = 135/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 635438 AAATGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCT-GGTCT 635496 || ||||| || |||||||| |||||||||||||| || | || ||| | || ||||| Sbjct 8067 AACTGTACGCTCATTTTGACTGAGGGAGATTCAGCCAAGGCCTTGGCT-TCTCACGGTCT 8009 Query 635497 TAATGTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGT 635556 |||| | ||||||||||||| || | ||||| || ||||||||||| |||| | Sbjct 8008 CGATGTGGTCGGAAGAGATTATTTCGGTATCTTCCCGCTCAGAGGAAAACTGCTGAACGC 7949 Query 635557 TAGGGATGCTAGTCCTaaaaaaaTTGCTGATAATGAGGAAATTACAGCAATCaaaaaaaT 635616 |||| |||| | ||| || | |||| |||| || || | || || | |||| Sbjct 7948 GAGGGGTGCTTCCACGAAAGAATTATCTGACAATGCTGAGATCAATGCCATTCGACAAAT 7889 Query 635617 TGTTGGACT 635625 | |||| || Sbjct 7888 TATTGGTCT 7880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780694520771362