Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq2388 156 5e-33 seq289 120 4e-22 seq1000 109 7e-19 seq53 109 7e-19 >seq2388 Length=27108 Score = 156 bits (172), Expect = 5e-33 Identities = 424/643 (66%), Gaps = 7/643 (1%) Strand=Plus/Minus Query 7244 AGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAA 7303 || ||||||||||| |||||||||| || || || || || || ||||| | | || Sbjct 27069 AGCTCCTCAAAACGGGCACGGGTAACAGAGGTGTAAAAGTCGACTCCGTCAAAGAGAGAG 27010 Query 7304 TCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCC 7363 || ||||| | | | ||| | | ||||| | | || ||| ||||||||||| | Sbjct 27009 TCGATTTCGACAGAGGCTTGGGTCTGTGAAGACAGAGATCTCTTGGCGCGCTCACAAGTG 26950 Query 7364 GTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTA 7423 || || | | | || ||||| | ||| |||| || || || || || | || Sbjct 26949 GTGCGGAGTCTTCTGAGAGCACGGGCGTTTCCGGTGATGTCCTTTCCGTGCTTTCTCTTG 26890 Query 7424 AACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTA 7483 || |||| ||||| | | ||| || ||||| || || |||||||| || Sbjct 26889 AATTCTTGTACAAAGTGGTTGACCATTCTGTTGTCAAAATCCTCTCCTCCCAAGTGAGTG 26830 Query 7484 TCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCA 7543 || || ||||| || || || || || || || | || ||| | | | || || || Sbjct 26829 TCTCCAGCGGTGGCCTTCACCTCGAAAATTCCGTCGTCGATGGTGAGAAGGGATACGTCG 26770 Query 7544 AACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCG 7603 || |||||||| || |||||||| ||||| | |||| | || | | ||| || Sbjct 26769 AAGGTACCACCTCCAAGGTCAAAGATGAGAATGTTC---TGCTCCTTTCCACGCTTGTCC 26713 Query 7604 AGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACG-AAGACAGTTCAGGCC 7662 |||||||| ||||| || || || || ||||| || || ||||| ||| | || || Sbjct 26712 AGACCGTAAGCGATGGCGGCAGCGGTGGGTTCGTTGATGATACGTTTGAC-TTGGAGTCC 26654 Query 7663 AGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGAC 7722 | || | | ||||| || || ||||||| ||| || ||||| |||||||| || || Sbjct 26653 GGAGATGACTCCGGCATCCTTTGTGGCTTGTCTTTGAGAGTCGTTGAAGTAGGCGGGAAC 26594 Query 7723 CGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTT 7782 || ||||| || || ||||| | | || | | || || ||| | || ||||| || Sbjct 26593 GGTGACGACGGCTTCTGTGACGGTGGTTCCTAAGAAGGACTCTGCGGTCTCCTTCATCTT 26534 Query 7783 GGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGT-TTCGTTTCACCGTTAAAAT 7841 || ||||| || || ||||| || | | || ||| || || || || || | | Sbjct 26533 CAAGAGGACCATAGAAGAGATCTCCTCTGGTGTGAA-TGTCTTTGTCTCTCCCTTGTATT 26475 Query 7842 CAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTT 7884 ||||| || ||||| || || || | || ||| ||||| Sbjct 26474 GAACTTGGATGATGGGCTTGTCGGCCTCCTTGGTGATGACCTT 26432 Score = 113 bits (124), Expect = 6e-20 Identities = 120/158 (76%), Gaps = 3/158 (2%) Strand=Plus/Minus Query 7988 TGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGAT 8047 |||||||| || || || ||||| ||||| || | | | || || || ||||| ||| Sbjct 26228 TGGTTCTTAGCGGCATCTCCGATGAGACGGTCGCTGT---CAGTGAAAGCAACGTATGAT 26172 Query 8048 GGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACG 8107 || || |||| || ||||||||||| || ||||| || || ||||| |||||||| || Sbjct 26171 GGTGTGGTTCTGTTTCCTTGGTCGTTGGCGATAATCTCGACACGGTCATTTTGCCATACT 26112 Query 8108 CCGACGCACGAATACGTTGTTCCTAAATCAATACCGAT 8145 || ||||| || || ||||| || | ||||||||||| Sbjct 26111 CCAACGCAAGAGTATGTTGTGCCGAGGTCAATACCGAT 26074 >seq289 Length=20159 Score = 120 bits (132), Expect = 4e-22 Identities = 123/160 (77%), Gaps = 3/160 (2%) Strand=Plus/Plus Query 7988 TGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGAT 8047 |||||||| || || || ||||| ||||| || | | ||||||| |||||||| ||| Sbjct 452 TGGTTCTTAGCGGCATCACCGATGAGACGGTCGGTGT---CCGTAAAGGCGACGTATGAT 508 Query 8048 GGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACG 8107 || || |||| || ||||||||||| || || |||||||| ||||| || ||||| || Sbjct 509 GGTGTGGTTCTGTTTCCTTGGTCGTTGGCGATGATTTCTACTCGGTCATTCTGCCACACT 568 Query 8108 CCGACGCACGAATACGTTGTTCCTAAATCAATACCGATTG 8147 || ||||| || || ||||| || | ||| || || |||| Sbjct 569 CCAACGCAGGAGTATGTTGTGCCGAGATCGATTCCAATTG 608 Score = 84.2 bits (92), Expect = 3e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 7918 TTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTT 7977 |||||| || ||||||||||| || |||||||| ||||||||||||||||| | ||||| Sbjct 321 TTGGTCAGAGAACTTTCTTCCAATTAGACGCTTGGCATCAAAAACTGTGTTCTCTGGGTT 380 Query 7978 CATGGC 7983 |||||| Sbjct 381 CATGGC 386 >seq1000 Length=14169 Score = 109 bits (120), Expect = 7e-19 Identities = 158/222 (71%), Gaps = 7/222 (3%) Strand=Plus/Plus Query 7501 GACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAG 7560 ||| ||||||||||| ||||||| | || | || ||||| || |||||||| || || Sbjct 2180 GACCTCAAAGATACCGTTTTCAATGGTCAATACGGAGACATCGAAGGTACCACCTCCAAG 2239 Query 7561 GTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGC 7620 |||||||| ||| | |||| | ||| ||||| || | ||||| |||| || Sbjct 2240 GTCAAAAACGAGAATGTTC------TTCTCTCCCTTCTTGTCTAATCCGTAGGCGAGGGC 2293 Query 7621 CGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATC 7680 || || || || || || || |||||||| ||| || || ||||| || | ||||| Sbjct 2294 GGCGGCGGTAGGCTCGTTGATGATACGAAGGACGTTGAGTCCGGCAATGGTACCGGCATC 2353 Query 7681 TTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGAC 7722 || || || |||| ||| | ||||| ||||| | |||||| Sbjct 2354 CTTGGTGGCCTGTCTTTGGGCGTCGTTGAAGTACG-CGGGAC 2394 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 7029 CTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTT 7088 |||| || | || ||||| ||||| |||||||||||||||| || || |||| | Sbjct 1665 CTTGTACGGCGGCTCCGTAGGCGACGGCCTCATCGGGGTTAACTCCCTTGTTGGGTTCCT 1724 Query 7089 TACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGA 7148 | ||||| ||| | ||| |||| ||||| | || ||||| ||||| ||||| |||| Sbjct 1725 TTCCGTTGAAAAAGTCCTTCAACAACTGTTGGACCTTGGGGATACGTGTAGATCCTCCGA 1784 Query 7149 CCAAAACGATTTC 7161 ||||||| || || Sbjct 1785 CCAAAACAATCTC 1797 >seq53 Length=50906 Score = 109 bits (120), Expect = 7e-19 Identities = 418/652 (64%), Gaps = 16/652 (2%) Strand=Plus/Minus Query 6518 TAACAGTAGTTTTCGAGACCATTCTTCGCCTCGACCTTTTTCGCGTACTTTTCATCTTCA 6577 ||| ||||||| || || || ||||| ||||||||||| | || || || || Sbjct 666 TAAGAGTAGTTCTCCAGGCCGTTCTTGGCCTCGACCTTCTGTCTGTTTGCGTCGTCCTCG 607 Query 6578 TCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGATAATCTCCCC 6637 | || |||| || || || ||||||| || || || | || | ||| ||| Sbjct 606 GCCTTGTACTGCTCGGCCTCGCGGACCATGCGCTCGATTTCGGACTGAGAAAGTCTTCCC 547 Query 6638 TTATCATTCGTAATCGTAATCTTT-TCGGATTTACCCGAGGCCTTATCTTCAGCACTTAC 6696 || || || || || || || || || ||| || | | ||| ||| ||| | || Sbjct 546 TTGTCGTTTGTGATGGTGATGTTGCTCTTCTTT-CCGGTAGTCTTGTCTGAAGCGGTAAC 488 Query 6697 ATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCGG 6756 |||| ||| || || || | ||||| || | ||||||||| || || || Sbjct 487 GTTCAGGATAGAGTTGGCGTCCATGTCGAAGGAGACCTCGATTTGTGGTACTCCTCTGGG 428 Query 6757 TGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTCTT 6816 ||||| || || || | || ||| | || || | |||| ||| | | | | Sbjct 427 TGCGGGGGGGATTCCACCAAGCTCGAATTTTCCGAGAAGGTTGTTGTCCTTGGTCATACC 368 Query 6817 ACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGAGAA 6876 ||| || ||||| ||||||| || ||| | ||||| || || || ||||| Sbjct 367 ACGCTCTCCTTCGTAGACTTGGATGAGCACACCGGGTTGGTTGTCGGCGTATGTGGAGAA 308 Query 6877 GATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACC 6936 | | || ||||| | || | || | ||||| || || | | |||||||| || Sbjct 307 GGTCTGGGACTTCTTGGTGGGGACGGTGGAGTTTCTGGGGATGAGGGTGGTCATAACTCC 248 Query 6937 ACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCA-----AGA--GTAACAGGT 6989 || ||| |||| || || || ||||| | ||||| | ||| || | |||| Sbjct 247 TCCGGCAGTCTCGATACCGAGGGAAAGAGGGGCGACGTCGAGCAACAGAATGTCAGAGGT 188 Query 6990 CTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATG 7049 |||| || | || | || | | |||||||||||||| | || ||||| | Sbjct 187 CTTGG-CACCT------CCAGCTCCGGAGAGAATGGCGGCTTGGACGGCAGCTCCGTAGG 135 Query 7050 CGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATA 7109 |||| ||||| |||||||| || | || |||| || || ||||| || | ||| | Sbjct 134 CGACGGCCTCGTCGGGGTTGATAGACTTGTTCAACTCCTTTCCGTTGAAGAACTCCTGGA 75 Query 7110 ACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTC 7161 |||||| || | || ||||| || || ||||| ||||||||||||| ||| Sbjct 74 GCATTTGCTGGACCTTGGGGATACGGGTGGATCCTCCGACCAAAACGACTTC 23 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635112340784680