Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq455 131 2e-25 seq1441 120 4e-22 seq1881 98.7 1e-15 >seq455 Length=31299 Score = 131 bits (144), Expect = 2e-25 Identities = 205/286 (72%), Gaps = 13/286 (5%) Strand=Plus/Minus Query 102051 ATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCA--GCTCTTTGAAGCCATCCAA- 102107 ||||||| ||| || ||||| | |||||| ||| |||||| | |||||| | Sbjct 8848 ATAGACACGTACATCAAGGACCCCACCGAGAAG--GCAATGCTCTTCCATGCCATCGACC 8791 Query 102108 ACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAG--T 102165 ||| | || || || ||||||| ||||| |||||| | | | | ||| ||| | | Sbjct 8790 ACA-TCCCCTGCATCAAAAAGAAGGCGGACTGGGCTCT----TCGCTGGAT-CAATGATT 8737 Query 102166 CGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTG 102225 | || || | || || ||| |||| || || || ||||| ||||||||||||| Sbjct 8736 CCGACTCTTTCGGAGAACGCCTCGTCGCTTTCGCTGCCGTAGAGGGCATCTTCTTCTCTG 8677 Query 102226 GTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 102285 |||||||||| | || | |||| | |||||| ||||||||||||||||||| | | | Sbjct 8676 GTTCCTTCTGTTCCATCTTTTGGTTGAAGAAGAGAGGTCTCATGCCAGGTCTTTCCACAT 8617 Query 102286 CCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 | ||||| |||| ||||| ||||| ||||||||| || ||||| Sbjct 8616 CAAACGAATTTATTTCTCGCGACGAAGGACTCCACTGCGACTTTGC 8571 >seq1441 Length=33442 Score = 120 bits (132), Expect = 4e-22 Identities = 234/343 (68%), Gaps = 7/343 (2%) Strand=Plus/Plus Query 111705 TTCATCCACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGT 111764 |||| ||||| ||||| || || |||||| |||| ||||||||||| || ||||| Sbjct 1663 TTCACACACGCCACACCCACACTTTTCAACTCTGGCACACCAAGACCTCAGATGTCTTCC 1722 Query 111765 TGTTTCCTTATTGCAAACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAA 111824 || |||||| | | | ||||||||||| ||| | || || |||| |||||| | | Sbjct 1723 TGCTTCCTTTTGGACATGAAGGAGGATTCTATCGAGGGTATCTACGACACTCTAAAGCAG 1782 Query 111825 TGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGC- 111883 || || | ||||| || | || || || ||||| || ||| | ||||||| Sbjct 1783 TGCGCTCTCATCTCTAAATCTGCCGGAGGCATCGGTCTGTCTGCCCACAAGATCAGAGCT 1842 Query 111884 -CAACAAGTCTCGTATTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTC 111942 || ||| | || ||||| ||||||||| || |||| | | || |||||| Sbjct 1843 GCAGACAGTTAC--ATCAGAGGAACAAATGGTGCCTCTAATGGACTCGTCCCCATGCTTA 1900 Query 111943 GCGTATTTAACGCCACAGCGCGCTATGTAAACCAAGCTGGGCGT---CGCAAGGGATCTA 111999 | || || || | ||| || || ||||| |||||| || || | ||||| | Sbjct 1901 GAGTCTTCAATGACACTGCACGTTATGTCGACCAAGGAGGTGGTAAGAGGAAGGGTGCCT 1960 Query 112000 TCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTT 112042 | || || ||||| ||||||||||| || || |||| ||||| Sbjct 1961 TTGCCGTTTATCTGGAGCCATGGCATGCCGACATCACCGAGTT 2003 >seq1881 Length=25171 Score = 98.7 bits (108), Expect = 1e-15 Identities = 123/168 (73%), Gaps = 7/168 (4%) Strand=Plus/Plus Query 102112 TTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAG--TCGCG 102169 |||| || || |||||||| || || ||||| ||| ||| | ||| | ||| Sbjct 17825 TTCCTTGCATACAAAAGAAGGCAGAGTGGGCAATGCGCTGGAT-----CAACGATTCGGA 17879 Query 102170 TTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTC 102229 || |||| ||| ||||| | || ||||| ||| |||||||||||||| |||||||| Sbjct 17880 CTCTTTTGGAGAGAGACTCGTTGCCTTTGCTGCTGTGGAGGGTATCTTCTTTTCTGGTTC 17939 Query 102230 CTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCT 102277 ||||||| | || | |||||| |||||| | || |||||| ||||| Sbjct 17940 CTTCTGCTCCATCTTTTGGCTGAAGAAGAGGGGACTCATGGAGGGTCT 17987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620722404335440