Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1441 159 4e-34 seq455 107 2e-18 seq1881 89.7 6e-13 >seq1441 Length=33442 Score = 159 bits (176), Expect = 4e-34 Identities = 638/1001 (64%), Gaps = 70/1001 (7%) Strand=Plus/Minus Query 106442 TCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTA 106501 || |||||| |||| || |||||||| ||||||| |||||| || || |||||||| Sbjct 2488 TCCTTGACAAACTTGGGCAGGGCGATGGATGCCAGATTGCACACCGCAACCTCATCCTGC 2429 Query 106502 TCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTT 106561 | |||||||| | ||| || || ||||||||| | ||| || || || | |||| | Sbjct 2428 GCAGTGTACTCCATAATCTCGGTGCACAAGTTGCTAGACTTGATGGTTCCGAGGTTCTGT 2369 Query 106562 TGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTC 106621 ||||| |||||| ||||| || |||||||||||||| || || || || ||||| || Sbjct 2368 TGGTTGCTCTTTCTGTTGGCGGCGTCCTTGTAGAGCATATAAGGTGTTCCGGTCTCAATC 2309 Query 106622 TGTGACTTGAGAATTGCCTTCCACACATCGGCGGC--TGGTACAATGGCGTTGGCCCGTC 106679 || || | | || | ||||| ||| ||| || | | | |||| ||| Sbjct 2308 TGAGAGTCCAAGATGGAGAACCACAGATCCTGGGCCTTGATCGTCTTTC--TGGCGAGTC 2251 Query 106680 CC---TCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCC---ACCGCGTCGG 106733 || || |||||||| |||| | ||||||||||| ||| ||| ||| || Sbjct 2250 CCGGTGTGGCTTCGTACTTGTTGTACAACTGCTCAAACTCCTCTCCCCAGACCTCGT-GG 2192 Query 106734 AGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCT 106793 ||| | || || | || |||||||| | ||||| | ||| | ||||| || | || Sbjct 2191 AGACCCTTG--GCTTCGTTGGGACAGAATAAGGACCAGTCTCCATCTTCCTCCACTCTCT 2134 Query 106794 TCATGAAAAGGTCTGGAATCCACAGGG-------ATGAAA----AGAGATCTCTACA--- 106839 |||| || || || || ||| | ||| |||||| || || | || | Sbjct 2133 TCATAAACAGATCGGGGATC--CTGGGAAACTCAATGAAATTCCAGTGAAATTTAGAATT 2076 Query 106840 ------CCGAG--------------------------CCTCTTCGTCACCTTGGTTGAGT 106867 | ||| |||||| | || || || | Sbjct 2075 ACGTACCAGAGGGCGTAAAAGAGGTCACGTGCTCTCCTCTCTTCTTTTCCGTGATTCTTT 2016 Query 106868 CGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGAT 106927 | | || | ||||| |||| || || ||||||||||| ||||| || || | | Sbjct 2015 CTGAGATCCAAAAACTCGGTGATGTCGGCATGCCATGGCTCCAGATAAACGGCAAAGGCA 1956 Query 106928 CCCTTTC---GACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGC 106984 ||||| | || || |||| | ||||| || || ||| | || || || | |||| Sbjct 1955 CCCTTCCTCTTACCACCTCCTTGGTCGACATAACGTGCAGTGTCATTGAAGACTCTAAGC 1896 Query 106985 ATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTG--GCTC 107042 || || | | |||| || ||||||||| || | || | | | || |||| Sbjct 1895 ATGGGGACGAGTCCATTAGAGGCACCATTTGTTCCTCTGAT--GTAACTGTCTGCAGCTC 1838 Query 107043 TCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCG 107102 | | | ||| || || || || || || | || ||||| | || |||| | Sbjct 1837 TGATCTTGTGGGCAGACAGACCGATGCCTCCGGCAGATTTAGAGATGAGAGCGCACTGCT 1778 Query 107103 TAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGG 107162 | ||||| | |||||||| | ||| || |||||||| || | | ||||||||| | Sbjct 1777 TTAGAGTGTCGTAGATACCCTCGATAGAATCCTCCTTCATGTCCAAAAGGAAGCAGGAAG 1718 Query 107163 ACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATAC 107222 ||||||| ||||||||||| |||| ||||| || || ||||| ||||| |||| | Sbjct 1717 ACATCTGAGGTCTTGGTGTGCCAGAGTTGAAAAGTGTGGGTGTGGCGTGTGTGAAAAACA 1658 Query 107223 CTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGA 107282 |||||| | | | ||||| || | | ||| | |||||| | ||| || |||| Sbjct 1657 GTTGGGATAACAGATGATATGTTTCGATGGCAGCTTTGATGTCTCTCTTGTGAATACCGA 1598 Query 107283 TGGCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGA- 107341 | ||| | | ||| | || ||||||| | || | || || | || | | || Sbjct 1597 CAGACACTCTGAGAAAGAGGTGTTGGGGTCTCTCGACGATCTGTCCCTTGA-TCTTAGAG 1539 Query 107342 AGATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAA 107382 || ||| ||| | || ||| ||| |||||||||| |||| Sbjct 1538 AGGTAGGACTTTTGGAGAGTTCTGAAACCAAAGTAATCAAA 1498 >seq455 Length=31299 Score = 107 bits (118), Expect = 2e-18 Identities = 130/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 117259 TTGAAGAGCTCCACGGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTT 117318 ||||||||| |||||| || |||||| || || || || ||||||| ||| ||| Sbjct 8556 TTGAAGAGCAGGCAGGCAAAGTCGCAGTGGAGTCCTTCGTCGCGAGAAATAAATTCGTTT 8615 Query 117319 GAGAAGCATAGGCCTGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGAC 117378 || | | || |||||||||||||| | ||||||||||||| | || | ||||| || Sbjct 8616 GATGTGGAAAGACCTGGCATGAGACCTCTCTTCTTCAACCAAAAGATGGAACAGAAGGAA 8675 Query 117379 CCGGAGAAGAAGATACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAG 117435 || ||||||||||| ||||| || || || || | ||||| || |||| ||| Sbjct 8676 CCAGAGAAGAAGATGCCCTCTACGGCAGCGAAAGCGACGAGGCGTTCTCCGAAAGAG 8732 >seq1881 Length=25171 Score = 89.7 bits (98), Expect = 6e-13 Identities = 138/196 (70%), Gaps = 7/196 (4%) Strand=Plus/Minus Query 117286 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCC 117345 || || || ||||||| || || | ||||||||| | || || |||||| ||| Sbjct 18029 TGTAGCCCTTCATCTCTTGATATGAATTCATTTGATTTTCCAAGACCCTCCATGAGTCCC 17970 Query 117346 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 117405 | |||||||| |||| | || | |||||| || || || |||||||||||||||||| Sbjct 17969 CTCTTCTTCAGCCAAAAGATGGAGCAGAAGGAACCAGAAAAGAAGATACCCTCCACAGCA 17910 Query 117406 GCAAACGCAAAAAGGCGCTCGGCGAAGGAG--CGAGACTTTGTGTCAAACCATTTCATTG 117463 ||||| |||| || | ||| | || ||| ||| | ||| | ||| ||||| Sbjct 17909 GCAAAGGCAACGAGTCTCTCTCCAAAAGAGTCCGAATCGTTG-----ATCCAGCGCATTG 17855 Query 117464 CCCATTTCGCCTTCTT 117479 |||| | |||||||| Sbjct 17854 CCCACTCTGCCTTCTT 17839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589961795243480