Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1378 125 5e-24 seq1564 111 1e-19 seq1239 104 2e-17 seq2313 93.3 3e-14 seq593 93.3 3e-14 seq2113 89.7 3e-13 seq343 87.8 1e-12 seq1344 86.0 4e-12 seq1766 84.2 1e-11 >seq1378 Length=10532 Score = 125 bits (138), Expect = 5e-24 Identities = 169/235 (72%), Gaps = 8/235 (3%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| || || ||||| || | || | ||| || ||||||||||||||||| || Sbjct 10467 CCTCCTCTTAATCTCAATACAAGATGTAATGTAGACTCCTTCTGAATGTTATAGTCTGAG 10408 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| || ||||| ||||||||||| || |||| || ||||| | || Sbjct 10407 AGGGTACGGCCATCCTCGAGCTGCTTTCCGGCAAAGATGAGTCTCTGTTGGTCGGGGGGA 10348 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTC 34930 | || |||||||| ||||| ||||| | ||||||| ||| | || Sbjct 10347 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGAC----GTTATCGATGGTGTCAGATGATTC 10292 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATTC 34985 || || | ||| ||||| ||||| |||||||||||||| ||||||||||| ||| Sbjct 10291 GACCTCTAAGGTGATGGTCTTTCCGGTGAGAGTCTTCACGAAGATCTGCATGTTC 10237 >seq1564 Length=26684 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| |||| | | |||||||| | ||| || ||||||||||| ||||| | Sbjct 11826 TTCCTCCTCTCAGACGAAGGACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAG 11767 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | || | || | || || ||||| ||||||||||| || |||| || ||||| | | Sbjct 11766 AGAGAGTGCGGCCGTCCTCAAGCTGCTTTCCGGCAAAAATAAGTCTCTGTTGGTCGGGGG 11707 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | ||||||||||| ||||| ||| ||| | || | ||| | ||| | Sbjct 11706 GGATTCCCTCCTTGTCTTGGATCTTGGCTTTTACGTTGTCGATGGTATCAGAGCTCTCGA 11647 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | |||| ||| ||||| ||||| || | |||||| || ||||||||||| Sbjct 11646 CCTCGAGGGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 11598 >seq1239 Length=29077 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| ||||| ||||| || | ||||| ||| |||||||| || || ||||| | Sbjct 23342 TTCCTCCTCTCAATCTCAACACGAGGTGAAGGGTGGACTCTTTCTGGATATTGTAGTCTG 23401 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | ||| | | | || || || || |||||||| || || |||| ||| ||||| | | Sbjct 23402 AGAGGGTCCTGCCGTCCTCGAGTTGCTTTCCGGCGAAAATGAGTCTTTGTTGGTCGGGAG 23461 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | ||||||||||| |||||| |||||| | || | || | ||| | Sbjct 23462 GGATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCTGAGCTCTCCA 23521 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 | || | || ||||| ||||| || | || || |||||||||||||| || Sbjct 23522 CCTCCAAAGTGATGGTCTTTCCGGTCAATGTTTTTACAAAGATCTGCATGTT 23573 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| | || ||||| |||||||||| || || ||||||||||| || || || Sbjct 23116 CCTCCTCGTAATCTCAACACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCTGAG 23175 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| |||| ||| ||||| ||||| || |||| || ||||| | || Sbjct 23176 AGAGTGCGGCCATCTTCCAACTGCTTTCCAGCAAAGATGAGTCTCTGTTGGTCGGGAGGG 23235 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || |||||||| ||||| |||||| | || | || | ||| || Sbjct 23236 ATACCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCTGAGCTCTCCACC 23295 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | || ||||| ||||| || || ||||| |||||||||||||| Sbjct 23296 TCCAAAGTGATGGTCTTTCCGGTCAGGGTCTTGACAAAGATCTGCAT 23342 >seq2313 Length=44285 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || |||||||| ||||| ||| ||| | | || || ||||| |||||||| || Sbjct 27835 TCCTTTTGAATGTTGTAGTCGCTGAGGGTTCTTCCGTCCTCTAGCTGCTTTCCGGCGAAG 27776 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || |||| || |||||| | || | || |||||||| ||||| |||||| Sbjct 27775 ATGAGTCTCTGTTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATCTTAGCCTTGACGTTG 27716 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 |||| | || | ||||| |||| ||| || || ||||| ||||| ||||| || Sbjct 27715 TCTATTGTATCTGAAGATTCAACTTCGAGGGTGATTGTCTTTCCAGTGAGGGTCTTTACG 27656 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 27655 AAGATCTGCAT 27645 >seq593 Length=28782 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 34754 TCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGA 34813 |||||| || | | || || | ||||| || ||||||||| ||||| ||||| || Sbjct 15423 TCCTCCTCTAAGACGCAGGACAAGGTGAAGAGTAGATTCTTTCTGGATGTTGTAGTCAGA 15482 Query 34814 AAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGG 34873 ||| ||| | || || ||||| ||||||||||| || |||| || ||||| | || Sbjct 15483 AAGAGTTCTGCCGTCCTCAAGCTGCTTTCCGGCAAAAATGAGTCTCTGTTGGTCGGGAGG 15542 Query 34874 CACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCT 34929 | || |||||||| |||||| || || || | ||||| || || | Sbjct 15543 GATTCCTTCCTTGTCTTGAATCTTGGCCTTAAC--AT--TGTCGATAGTATCTGAGGATT 15598 Query 34930 CAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || | ||| ||||| || || |||||||| || ||||| |||||||| Sbjct 15599 CTACTTCTAAGGTGATGGTCTTGCCGGTGAGAGTTTTGACAAAAATCTGCAT 15650 >seq2113 Length=21246 Score = 89.7 bits (98), Expect = 3e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTG 34837 ||||| ||| || ||||| || || ||||| || || | ||| | || || || || Sbjct 21125 GTGAAGAGTGGACTCCTTCTGGATATTGTAGTCAGAGAGAGTACGTCCGTCCTCGAGTTG 21066 Query 34838 TTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT 34897 |||||||| || || | || ||| || || | || | ||||||||||| ||||| Sbjct 21065 CTTTCCGGCGAAGATCAATCTTTGTTGATCAGGGGGAATTCCCTCCTTGTCTTGGATCTT 21006 Query 34898 CTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGT 34957 | ||| ||| | || | ||| | ||| || |||| ||| || || ||||| || Sbjct 21005 CGCTTTTACGTTGTCGATGGTGTCAGAGCTCTCGACCTCGAGGGTGATAGTCTTTCCGGT 20946 Query 34958 GAGAGTCTTCACAAAGATCTGCAT 34981 ||| ||||| || ||||||||||| Sbjct 20945 GAGGGTCTTGACGAAGATCTGCAT 20922 >seq343 Length=26413 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34754 TCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGA 34813 |||||| ||||| | | ||| | |||| || || ||||||||||||||||| || Sbjct 303 TCCTCCTCTCAAGCGAAGAACGAGATGAAGAGTAGACTCCTTCTGAATGTTATAGTCTGA 244 Query 34814 AAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGG 34873 ||| | || |||| || ||||| ||||||||||| || |||| || || || | || Sbjct 243 GAGGGTACGGCCATCCTCGAGCTGCTTTCCGGCAAAAATGAGTCTCTGTTGATCGGGTGG 184 Query 34874 CACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAAC 34933 | || || ||||| ||||| ||| ||| | || | || ||| || Sbjct 183 GATGCCTTCTTTGTCTTGTATCTTGGCTTTTACGTTGTCGATAGTGTCTGAACTCTCTAC 124 Query 34934 ATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||| ||| || || ||||| || | |||||| || || |||||||| Sbjct 123 TTCGAGGGTGATTGTCTTTCCAGTCAAAGTCTTGACGAAAATCTGCAT 76 >seq1344 Length=40060 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| || | | ||||| ||||| | ||| || ||||| ||||||||||| | Sbjct 24208 TTCCTCCTCTGAGACGTAAAACTAAGTGGAGCGTGGACTCCTTCTGGATGTTATAGTCAG 24267 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | || | ||| | || || || || |||||||| || || |||| || ||||| | | Sbjct 24268 AGAGAGTACGTCCGTCCTCGAGTTGCTTTCCGGCGAAAATGAGTCTCTGTTGGTCGGGGG 24327 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | ||||||||||| ||| || |||||| | || | || | || | Sbjct 24328 GGATTCCCTCCTTGTCTTGAATTTTAGCCTTGACGTTGTCGATGGTGTCTGAAGATTCTA 24387 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGC 34979 | |||| ||| || || ||||| || || ||||| || ||||| ||| Sbjct 24388 CTTCGAGGGTGATTGTCTTTCCTGTAAGTGTCTTTACGAAGATTTGC 24434 >seq1766 Length=5059 Score = 84.2 bits (92), Expect = 1e-11 Identities = 159/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 34754 TCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGA 34813 |||||| ||||| | | ||| | |||| || || ||||||||||||||||| || Sbjct 4481 TCCTCCTCTCAAGCGAAGAACGAGATGAAGAGTAGACTCCTTCTGAATGTTATAGTCTGA 4540 Query 34814 AAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGG 34873 ||| |||| | || || | || ||||||||||| || |||| || || || | || Sbjct 4541 GAGGGTTCGGCCGTCCTCTAATTGCTTTCCGGCAAAAATGAGTCTCTGTTGATCAGGGGG 4600 Query 34874 CACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCT 34929 | || |||||||| ||||| ||| || || | ||||| || | || Sbjct 4601 AATTCCTTCCTTGTCTTGGATCTTGGCTTTTAC--AT--TGTCGATGGTGTCTGAGCTCT 4656 Query 34930 CAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || |||| || || || ||||| ||||| ||||| || ||||| ||||| Sbjct 4657 CTACTTCGAGTGTGATTGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCAT 4708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324623404171656