Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1881 118 1e-21 seq455 84.2 2e-11 >seq1881 Length=25171 Score = 118 bits (130), Expect = 1e-21 Identities = 249/367 (68%), Gaps = 11/367 (3%) Strand=Plus/Minus Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020 || || || || |||||||| || || ||||| ||| |||||||| || | | | Sbjct 18044 CAAGCGAAGTCGCAATGTAGCCCTTCATCTCTTGATATGAATTCATTTGATTTTCCAAGA 17985 Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA-AATGATCCAGAAAAGAA 19079 || ||| ||||| || || || | ||| || || || ||| || || ||||||||||| Sbjct 17984 CCCTCCATGAGTCCCCTCTTCTTCAGCCAAAAGATGGA-GCAGAAGGAACCAGAAAAGAA 17926 Query 19080 TATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATG 19139 ||||| || || || ||||| ||||| ||||| |||||| | || || || | Sbjct 17925 GATACCCTCCACAGCAGCAAAGGCAACGAGTCTCTCTCCAAA---AGAGTCCGAATCGTT 17869 Query 19140 AATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATT 19199 ||||| || |||||| || |||||||||| || || || || || |||| | Sbjct 17868 GATCCAGCGCATTGCCCACTCTGCCTTCTTTTGTATGCAAGGAATGTGATCGATAGCGTG 17809 Query 19200 AAATAGATACATACGCTCATCTGT---ATCTTTAACATATGCATCTATCAATAAACTGTA 19256 |||| | | ||| ||| | |||| | ||| | || |||| | | ||| Sbjct 17808 GAATA---AGAGGTGCTTCTCTTTCTCATCTCGGATATACGTGTCGATCAGAAGAGAGTA 17752 Query 19257 CATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGT 19316 |||| | ||| || || ||||| || |||||||| || ||||| ||||| || |||| Sbjct 17751 TGTTTCGGCATGTATGTTCTCTATGGCAATCTGAAAGCCATAAAAGCATCTGGCCTCTGG 17692 Query 19317 TATCTGT 19323 |||||| Sbjct 17691 AATCTGT 17685 >seq455 Length=31299 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/212 (69%), Gaps = 3/212 (1%) Strand=Plus/Plus Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020 || ||||| || || || ||||| ||||| | | || ||||| || || | | | Sbjct 8568 CAGGCAAAGTCGCAGTGGAGTCCTTCGTCGCGAGAAATAAATTCGTTTGATGTGGAAAGA 8627 Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAAT 19080 || ||||| || ||||| || || ||||| || || ||| || || ||||| ||||| Sbjct 8628 CCTGGCATGAGACCTCTCTTCTTCAACCAAAAGATGGAACAGAAGGAACCAGAGAAGAAG 8687 Query 19081 ATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGA 19140 || || ||||| || || ||||| || || | |||||| || || || || || Sbjct 8688 ATGCCCTCTACGGCAGCGAAAGCGACGAGGCGTTCTCCGAAAG-AG--TCGGAATCATTG 8744 Query 19141 ATCCATTTCAGTGCCCAATCAGCCTTCTTTTT 19172 ||||| || ||||| || ||||||||||| Sbjct 8745 ATCCAGCGAAGAGCCCAGTCCGCCTTCTTTTT 8776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562090693070280