Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq593 114 1e-19 seq2113 104 2e-16 seq1766 98.7 8e-15 seq1564 87.8 1e-11 seq1344 87.8 1e-11 seq343 86.0 5e-11 >seq593 Length=28782 Score = 114 bits (126), Expect = 1e-19 Identities = 160/222 (72%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 563254 CTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 || ||||| || ||||| ||||| ||| |||||| || ||||| |||| |||||| Sbjct 15430 CTAAGACGCAGGACAAGGTGAAGAGTAGATTCTTTCTGGATGTTGTAGTCAGAAAGAGTT 15489 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 || || ||||| || |||||||||||||| ||||| || || || ||||| |||||| Sbjct 15490 CTGCCGTCCTCAAGCTGCTTTCCGGCAAAAATGAGTCTCTGTTGGTCGGGAGGGATTCCT 15549 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAG 563432 || || |||||||| || || || || || ||||| | | || | | ||| | Sbjct 15550 TCCTTGTCTTGAATCTTGGCCTTAACATTGTCGATAGTATCTGAG-GATTCTACTTCTAA 15608 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || | || || || || |||||||| || ||||| ||||| Sbjct 15609 GGTGATGGTCTTGCCGGTGAGAGTTTTGACAAAAATCTGCAT 15650 Score = 105 bits (116), Expect = 5e-17 Identities = 158/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 563254 CTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 |||||||| || || |||||||| ||| || || ||| || || || | || ||| Sbjct 28439 CTGAGACGAAGAACCAGATGAAGAGTAGACTCCTTCTGAATGTTATAGTCTGAGAGGGTT 28498 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | || || | ||| |||||||| || || ||||| || |||||||| ||||||||| Sbjct 28499 CGGCCGTCCTCTAATTGCTTTCCGGCGAAGATGAGTCTCTGTTGATCAGGGGGAATTCCT 28558 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTG-TGAGTACATTCGAG 563432 || || ||||| || || |||||| || || ||||| | | | ||| |||||| Sbjct 28559 TCCTTGTCTTGTATCTTGGCTTTTACATTGTCGATGGTATCTGAGCTCTCTAC-TTCGAG 28617 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || | || || ||||| || || || ||||| |||||||| Sbjct 28618 TGTGATTGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCAT 28659 Score = 100 bits (110), Expect = 2e-15 Identities = 157/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 563254 CTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 ||||||||||| || |||||||| ||| || || |||||||| || | ||||| Sbjct 15658 CTGAGACGGAGGACGAGATGAAGAGTAGACTCCTTCTGGATATTGTAGTCGGAAAGAGTA 15717 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | | || ||||| || ||||||||||| || ||||| || ||||| || || |||||| Sbjct 15718 CGTCCGTCCTCAAGCTGCTTTCCGGCAAAGATGAGTCTCTGTTGATCGGGTGGGATTCCT 15777 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAG 563432 || || |||||||| || || || || || || || | | ||| |||||| Sbjct 15778 TCCTTGTCTTGAATCTTGGCCTTCACATTATCTATAGTGTCTGAACTCTCTAC-TTCGAG 15836 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || | || || || || | ||| || |||||||| ||||| Sbjct 15837 GGTGATTGTCTTTCCTGTCAAAGTCTTGACGAAAATCTGCAT 15878 Score = 96.9 bits (106), Expect = 3e-14 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 563254 CTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 |||||||| | || | ||| || || ||| || || ||||| || || |||| Sbjct 15886 CTGAGACGTAAGACTAAATGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGCTTAAAGTT 15945 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 || || || | ||| |||||||| ||||| ||||| |||||||| || || ||||| Sbjct 15946 CTGCCGTCCTCTAATTGCTTTCCGGCGAAAATGAGTCTCTGCTGATCGGGTGGGATTCCC 16005 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAG 563432 ||||| ||||| || || ||| || || || ||||| | || | | ||| | Sbjct 16006 TCTTTGTCTTGGATCTTGGCTTTGACATTGTCGATGGTATCTGAA-GACTCGACTTCTAA 16064 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 |||| || || ||||| |||||||| |||||||||||||| Sbjct 16065 GGTAATTGTCTTGCCAGTGAGAGTTTTGACGAAAATTTGCAT 16106 >seq2113 Length=21246 Score = 104 bits (114), Expect = 2e-16 Identities = 160/224 (71%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 563254 CTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAG 563311 ||||||||||| || || ||||| || ||| | ||| |||||||| |||| |||| Sbjct 21142 CTGAGACGGAGGACGAGGTGAAGAGTGGACTCCTTCTGG--ATATTGTAGTCAGAGAGAG 21085 Query 563312 TTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTC 563371 | | | || || ||||| |||||||| || || | |||||| |||||||| ||||||| Sbjct 21084 TACGTCCGTCCTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGTTGATCAGGGGGAATTC 21025 Query 563372 CTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTG-TGAGTACATTCG 563430 | || || ||||| || || |||||| || || || |||| | | || ||| Sbjct 21024 CCTCCTTGTCTTGGATCTTCGCTTTTACGTTGTCGATGGTGTCAGAGCTCTCGAC-CTCG 20966 Query 563431 AGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || | ||| || || || || || || ||||| || ||||| Sbjct 20965 AGGGTGATAGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 20922 Score = 98.7 bits (108), Expect = 8e-15 Identities = 161/225 (72%), Gaps = 8/225 (4%) Strand=Plus/Minus Query 563254 CTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCT-AGA 563310 || ||||| |||||||| ||||| || ||| | ||| |||||||| || ||| ||| Sbjct 20914 CTCAGACGAAGTACAAGGTGAAGAGTGGACTCCTTCTGG--ATATTGTAGTC-GCTGAGA 20858 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 ||||| || ||||| || |||||||| ||||| ||||| || || || || || ||| Sbjct 20857 GTTCTACCGTCCTCAAGCTGCTTTCCGGCGAAAATGAGTCTCTGTTGGTCGGGGGGGATT 20798 Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTC 563429 || || ||||||||||| || || || || || || || | | || | | || Sbjct 20797 CCCTCCTTATCTTGAATCTTGGCCTTCACATTGTCGATGGTGTCGGAG-GACTCGACCTC 20739 Query 563430 GAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||| || | || || || || | ||| || |||||||||||||| Sbjct 20738 GAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAAATTTGCAT 20694 >seq1766 Length=5059 Score = 98.7 bits (108), Expect = 8e-15 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 563260 CGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAA 563319 || || || |||||||| ||| || || ||| || || || | || |||| Sbjct 4494 CGAAGAACGAGATGAAGAGTAGACTCCTTCTGAATGTTATAGTCTGAGAGGGTTCGGCCG 4553 Query 563320 TCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTA 563379 || || | ||| |||||||||||||| ||||| || |||||||| ||||||||||| || Sbjct 4554 TCCTCTAATTGCTTTCCGGCAAAAATGAGTCTCTGTTGATCAGGGGGAATTCCTTCCTTG 4613 Query 563380 TCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTG-TGAGTACATTCGAGAGTAAC 563438 ||||| || || |||||| || || || || | | | ||| |||||| || | Sbjct 4614 TCTTGGATCTTGGCTTTTACATTGTCGATGGTGTCTGAGCTCTCTAC-TTCGAGTGTGAT 4672 Query 563439 AGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || ||||| || || || ||||| |||||||| Sbjct 4673 TGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCAT 4708 Score = 87.8 bits (96), Expect = 1e-11 Identities = 158/226 (70%), Gaps = 10/226 (4%) Strand=Plus/Plus Query 563254 CTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTA-GAGT 563312 |||||||| | || | || || ||| || || ||||||||| || |||| | || Sbjct 4716 CTGAGACGTAAAACTAAGTGGAGAGTAGACTCCTTTTGAATATTGTAGTC-GCTAAGTGT 4774 Query 563313 TCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCC 563372 | | ||| || | ||| |||||||| ||||| ||||| || ||||| || || ||||| Sbjct 4775 GCGTCCATCCTCTAATTGCTTTCCGGCGAAAATGAGTCTCTGTTGATCGGGTGGGATTCC 4834 Query 563373 TTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAG---TACA-TT 563428 || || ||||| || || |||||| || || || || |||| | || || Sbjct 4835 CTCCTTGTCTTGTATCTTGGCTTTTACATTGTCGATGGTGTC----TGAGCTCTCCACTT 4890 Query 563429 CGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 |||| || | || || ||||| | ||| ||||||||||| ||||| Sbjct 4891 CGAGGGTGATTGTCTTTCCAGTCAAAGTCTTAACGAAAATCTGCAT 4936 >seq1564 Length=26684 Score = 87.8 bits (96), Expect = 1e-11 Identities = 154/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 563254 CTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 || ||||| || || | || ||||| || || ||| ||||| |||| ||||| Sbjct 11818 CTCAGACGAAGGACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAGAGAGTG 11759 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | || ||||| || |||||||||||||||||||| || || || || || ||||| Sbjct 11758 CGGCCGTCCTCAAGCTGCTTTCCGGCAAAAATAAGTCTCTGTTGGTCGGGGGGGATTCCC 11699 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTG-TGAGTACATTCGAG 563432 || || ||||| || || |||||| || || ||||||| | | || ||||| Sbjct 11698 TCCTTGTCTTGGATCTTGGCTTTTACGTTGTCGATGGTATCAGAGCTCTCGAC-CTCGAG 11640 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || | || || ||||| | ||| || ||||| || ||||| Sbjct 11639 GGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 11598 >seq1344 Length=40060 Score = 87.8 bits (96), Expect = 1e-11 Identities = 154/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 563254 CTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 |||||||| ||||| | |||||||| || || ||| ||||| || | || || Sbjct 23988 CTGAGACGAAGTACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCTGAGAGTGTG 24047 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | | ||| || ||||| |||||||| || || ||||| || || || || ||||||||| Sbjct 24048 CGTCCATCCTCCAGTTGCTTTCCGGCGAAGATGAGTCTCTGTTGGTCGGGGGGAATTCCT 24107 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAG 563432 || |||||||| || || ||| || || || || || | || | | ||| | Sbjct 24108 TCCTTATCTTGGATCTTGGCTTTAACATTGTCGATAGTGTCTG-AAGATTCGACTTCCAA 24166 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || | || || || || |||||||| || || |||||||| Sbjct 24167 GGTGATTGTCTTGCCGGTGAGAGTTTTGACAAAGATTTGCAT 24208 >seq343 Length=26413 Score = 86.0 bits (94), Expect = 5e-11 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 563260 CGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAA 563319 || || || |||||||| ||| || || ||| || || || | || || | | Sbjct 290 CGAAGAACGAGATGAAGAGTAGACTCCTTCTGAATGTTATAGTCTGAGAGGGTACGGCCA 231 Query 563320 TCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTA 563379 || || || || |||||||||||||| ||||| || ||||| || || || |||||||| Sbjct 230 TCCTCGAGCTGCTTTCCGGCAAAAATGAGTCTCTGTTGATCGGGTGGGATGCCTTCTTTG 171 Query 563380 TCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAAC 563438 ||||| || || |||||| || || || || | | ||| |||||| || | Sbjct 170 TCTTGTATCTTGGCTTTTACGTTGTCGATAGTGTCTGAACTCTCTAC-TTCGAGGGTGAT 112 Query 563439 AGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || ||||| | ||| || |||||||| ||||| Sbjct 111 TGTCTTTCCAGTCAAAGTCTTGACGAAAATCTGCAT 76 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029159716617730