Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq2030 87.8 1e-12 seq637 87.8 1e-12 >seq2030 Length=13636 Score = 87.8 bits (96), Expect = 1e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 29721 CTTAAAGTCGTCCAGGTTCTCCACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGG 29780 ||| || || || | ||||| ||| || || | | | || ||||| || ||||| || Sbjct 12771 CTTGAAATCATCAATGTTCTTCACGCTGGGGTCCACCTTGAGAGTGGGGAAAGGTCTCGG 12712 Query 29781 CTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCC 29840 ||| || || || || || ||||| || || ||||| | | |||||| ||||||||||| Sbjct 12711 CTCTCTTTCTAGTTGGGTTTTCAGAGGCTCGACGTGGTTCGTGTAGACATGAGCGTCTCC 12652 Query 29841 CAGGGTGTGGACAAACTCTCC 29861 ||| ||||| ||||| || || Sbjct 12651 CAGAGTGTGCACAAAATCACC 12631 >seq637 Length=38019 Score = 87.8 bits (96), Expect = 1e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 29721 CTTAAAGTCGTCCAGGTTCTCCACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGG 29780 ||| || || || | ||||| ||| || || | | | || ||||| || ||||| || Sbjct 11660 CTTGAAATCATCAATGTTCTTCACGCTGGGGTCCACCTTGAGAGTGGGGAAAGGTCTCGG 11601 Query 29781 CTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCC 29840 ||| || || || || || ||||| || || ||||| | | |||||| ||||||||||| Sbjct 11600 CTCTCTTTCTAGTTGGGTTTTCAGAGGCTCGACGTGGTTCGTGTAGACATGAGCGTCTCC 11541 Query 29841 CAGGGTGTGGACAAACTCTCC 29861 ||| ||||| ||||| || || Sbjct 11540 CAGAGTGTGCACAAAATCACC 11520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408604766470421