Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq1564 107 1e-18 seq593 104 2e-17 seq1239 100 2e-16 seq1766 98.7 8e-16 seq717 91.5 1e-13 seq2313 86.0 5e-12 seq343 86.0 5e-12 seq2113 82.4 6e-11 >seq1564 Length=26684 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || || | ||||| || || ||| ||| || ||||| ||||| ||||| Sbjct 11824 CCTCCTCTCAGACGAAGGACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAG 11765 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | || |||| || | |||||| |||||||| || |||| |||||| || | ||| Sbjct 11764 AGAGTGCGGCCGTCCTCAAGCTGCTTTCCGGCAAAAATAAGTCTCTGTTGGTCGGGGGGG 11705 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||||| ||||| |||||| | | | || || ||| ||| Sbjct 11704 ATTCCCTCCTTGTCTTGGATCTTGGCTTTTACGTTGTCGATGGTATCAGAGCTCTCGACC 11645 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || || ||||| |||||||| || || || |||||||| Sbjct 11644 TCGAGGGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 11598 >seq593 Length=28782 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || |||||||| || || ||| | || |||| || | |||||| |||||||| Sbjct 15687 CTCCTTCTGGATATTGTAGTCGGAAAGAGTACGTCCGTCCTCAAGCTGCTTTCCGGCAAA 15746 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || |||| ||||||||| | || | || |||||||| |||||| || ||| Sbjct 15747 GATGAGTCTCTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGAATCTTGGCCTTCACATT 15806 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || ||||| ||| || || | || || || ||||| |||||||| || || Sbjct 15807 ATCTATAGTGTCTGAACTCTCTACTTCGAGGGTGATTGTCTTTCCTGTCAAAGTCTTGAC 15866 Query 48755 AAAAATCTGCAT 48766 ||||||||||| Sbjct 15867 GAAAATCTGCAT 15878 Score = 95.1 bits (104), Expect = 9e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 ||||| || || ||||| ||||| ||| ||| |||| || | |||||| |||||||| Sbjct 15460 TCTTTCTGGATGTTGTAGTCAGAAAGAGTTCTGCCGTCCTCAAGCTGCTTTCCGGCAAAA 15519 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || |||| |||||| || | || | || |||||||| |||||| || ||| Sbjct 15520 ATGAGTCTCTGTTGGTCGGGAGGGATTCCTTCCTTGTCTTGAATCTTGGCCTTAACATTG 15579 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | || ||||| | || || || | || || || || || || | |||||| ||| Sbjct 15580 TCGATAGTATCTGAGGATTCTACTTCTAAGGTGATGGTCTTGCCGGTGAGAGTTTTGACA 15639 Query 48756 AAAATCTGCATC 48767 |||||||||||| Sbjct 15640 AAAATCTGCATC 15651 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || || || |||||||| || || ||| || || || |||||||| Sbjct 16108 CCACCTCTAAGACGTAATACCAAATGGAGAGTAGACTCCTTCTGGATGTTGTAATCGCTC 16167 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | | || |||| ||||||||||| ||||| || || |||| ||||||||| | || Sbjct 16168 AAAGTGCGGCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGTCTCTGTTGATCGGGTGGG 16227 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || |||||||| ||||| |||||| | | | | ||||| |||||| Sbjct 16228 ATTCCTTCCTTGTCTTGGATCTTGGCCTTTACATTATCGATTGTGTCTGAACTCTCCACT 16287 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || || ||||| || | || || || || || ||||| Sbjct 16288 TCGAGTGTGATTGTCTTTCCAGTTAGTGTCTTAACGAAGATTTGCAT 16334 >seq1239 Length=29077 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 ||||||||| || || || ||| || ||||| |||||||| || ||| | || | || Sbjct 23130 CAACACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCTGAGAGAGTGCGGCCATC 23189 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 ||||||||||| || ||||| || |||| |||||| || | || | || |||||||| Sbjct 23190 TTCCAACTGCTTTCCAGCAAAGATGAGTCTCTGTTGGTCGGGAGGGATACCTTCCTTGTC 23249 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 ||||| || || | | | ||||| ||||||||||| || || || Sbjct 23250 TTGGATCTTGGCCTTGACGTTGTCGATGGTGTCTGAGCTCTCCACCTCCAAAGTGATGGT 23309 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| |||| || || ||||| |||||||| Sbjct 23310 CTTTCCGGTCAGGGTCTTGACAAAGATCTGCAT 23342 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||||| | || || ||| |||||| || |||||||| || || || | | |||| Sbjct 23358 CAACACGAGGTGAAGGGTGGACTCTTTCTGGATATTGTAGTCTGAGAGGGTCCTGCCGTC 23417 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 || | ||||| ||||| || || |||| ||||| || | || | |||||||||||| Sbjct 23418 CTCGAGTTGCTTTCCGGCGAAAATGAGTCTTTGTTGGTCGGGAGGGATGCCCTCCTTGTC 23477 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 |||||| || || | | | ||||| ||||||||||| || || || Sbjct 23478 CTGAATCTTGGCCTTGACGTTGTCGATGGTGTCTGAGCTCTCCACCTCCAAAGTGATGGT 23537 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| ||||| ||||||||||| |||||||| Sbjct 23538 CTTTCCGGTCAATGTTTTTACAAAGATCTGCAT 23570 >seq1766 Length=5059 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || || || || || || || || ||| |||||||||||||| || Sbjct 4710 CCTCCTCTGAGACGTAAAACTAAGTGGAGAGTAGACTCCTTTTGAATATTGTAGTCGCTA 4769 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || | || || || ||||| ||||| || || |||| ||||||||| | || Sbjct 4770 AGTGTGCGTCCATCCTCTAATTGCTTTCCGGCGAAAATGAGTCTCTGTTGATCGGGTGGG 4829 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||||| ||||| ||||||| | | | ||||| |||||| Sbjct 4830 ATTCCCTCCTTGTCTTGTATCTTGGCTTTTACATTGTCGATGGTGTCTGAGCTCTCCACT 4889 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || || ||||| |||||||| || || ||||||||||| Sbjct 4890 TCGAGGGTGATTGTCTTTCCAGTCAAAGTCTTAACGAAAATCTGCAT 4936 >seq717 Length=13837 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||||||||| || ||||| || || || | || | || || |||||| Sbjct 188 TGGAGGGTGGACTCTTTTTGGATGTTGTAGTCGGAGAGGGTGCGCCCATCCTCTAACTGC 247 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || ||||| || |||| || ||||||||| | || | || |||||||| |||||| Sbjct 248 TTTCCGGCGAAGATCAATCTCTGTTGATCGGGAGGGATTCCTTCCTTGTCTTGAATCTTG 307 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || || | | | | || || | ||| || |||| ||||| || ||||| || Sbjct 308 GCCTTGACGTTATCGATGGTGTCGGAGGACTCTACTTCCAAAGTAATAGTCTTTCCTGTG 367 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 | || ||||| ||||||||||| Sbjct 368 AGGGTCTTTACGAAAATCTGCAT 390 >seq2313 Length=44285 Score = 86.0 bits (94), Expect = 5e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| |||||| || || ||||| || || ||| | || |||| |||| Sbjct 27619 TGGAGTGTGGACTCTTTCTGTATGTTGTAGTCGCTGAGGGTTCTTCCATCCTCCAGCTGC 27560 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || || || || || |||| |||||| || | ||| | |||||||| || ||||| Sbjct 27559 TTTCCAGCGAAGATGAGTCTCTGTTGGTCTGGGGGTATTCCCTCCTTATCTTGGATCTTG 27500 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 |||||| | | | ||||| ||| || |||| || || || ||||| || Sbjct 27499 GCCTTTACATTGTCGATGGTGTCTGAGCTCTCGACTTCCAAAGTGATGGTCTTTCCGGTT 27440 Query 48744 AAAGTTTTTACAAAAATCTGCATCGTGTGTACGTGT 48779 ||||| ||||||||||||||||| || ||||| ||| Sbjct 27439 AAAGTCTTTACAAAAATCTGCAT-GT-TGTACTTGT 27406 >seq343 Length=26413 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || ||||| || || || || || | || | || || | |||||| |||||||| Sbjct 267 CTCCTTCTGAATGTTATAGTCTGAGAGGGTACGGCCATCCTCGAGCTGCTTTCCGGCAAA 208 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || |||| ||||||||| | || | ||| || ||||| ||||| |||||| Sbjct 207 AATGAGTCTCTGTTGATCGGGTGGGATGCCTTCTTTGTCTTGTATCTTGGCTTTTACGTT 148 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | || ||||| ||| || || | || || || ||||| |||||||| || || Sbjct 147 GTCGATAGTGTCTGAACTCTCTACTTCGAGGGTGATTGTCTTTCCAGTCAAAGTCTTGAC 88 Query 48755 AAAAATCTGCAT 48766 ||||||||||| Sbjct 87 GAAAATCTGCAT 76 >seq2113 Length=21246 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| || || |||||||| ||||| ||| | || |||| || | ||| Sbjct 21124 TGAAGAGTGGACTCCTTCTGGATATTGTAGTCAGAGAGAGTACGTCCGTCCTCGAGTTGC 21065 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || ||||| || |||| || |||||||| | ||||| ||||||||||| ||||| Sbjct 21064 TTTCCGGCGAAGATCAATCTTTGTTGATCAGGGGGAATTCCCTCCTTGTCTTGGATCTTC 21005 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 |||||| | | | || || ||| ||||| | || || || ||||| || Sbjct 21004 GCTTTTACGTTGTCGATGGTGTCAGAGCTCTCGACCTCGAGGGTGATAGTCTTTCCGGTG 20945 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 | || || || || |||||||| Sbjct 20944 AGGGTCTTGACGAAGATCTGCAT 20922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380925635821371