Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq455 122 2e-22 seq1881 87.8 3e-12 seq1441 84.2 4e-11 >seq455 Length=31299 Score = 122 bits (134), Expect = 2e-22 Identities = 253/373 (68%), Gaps = 14/373 (4%) Strand=Plus/Minus Query 25753 ACGTACATTACAGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCC 25812 |||||||| | ||| | |||||| | ||| || ||||||||| ||||| ||| Sbjct 8842 ACGTACATCAAGGACCCCACCGAGAAGGCAATGCTCTTCCATGCCATCGACCACATCCCC 8783 Query 25813 AGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAAC-AGCCAGAGCGCTACGTT 25871 ||||||| | ||||||| ||||| | |||||||| | | || || | || Sbjct 8782 TGCATCAAAAAGAAGGCGGACTGGGCTCTTCGCTGGATCAATGATTCCGA---CT-CTTT 8727 Query 25872 TGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGC 25931 || || || || || || || ||||| || ||||||||||| ||| ||||| || Sbjct 8726 CGGAGAACGCCTCGTCGCTTTCGCTGCCGTAGAGGGCATCTTCTTCTCTGGTTCCTTCTG 8667 Query 25932 GGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCT 25991 ||||||| ||| | ||| ||| || |||||| || || | | || ||||| | Sbjct 8666 TTCCATCTTTTGGTTGAAGAAGAGAGGTCTCATGCCAGGTCTTTCCACATCAAACGAATT 8607 Query 25992 CATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTT 26051 || | ||||| || |||||| | || |||||||||||||||| || || | Sbjct 8606 TATTTCTCGCGACGAAGGACTCCACTGCGACTTTGCCTGCCTGCTCTTCA------ACAT 8553 Query 26052 GCTCC---ACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGAT 26108 ||| | | ||||| ||||||||||| | | |||||| || || |||||| Sbjct 8552 GCTACAAGAGAAACCCAGCCAAGAGACCGTGAAGAAGATCATCCTTGACGCCGTGGAGTG 8493 Query 26109 CGAGAAGGAGTTT 26121 ||||||||||||| Sbjct 8492 CGAGAAGGAGTTT 8480 >seq1881 Length=25171 Score = 87.8 bits (96), Expect = 3e-12 Identities = 129/174 (74%), Gaps = 9/174 (5%) Strand=Plus/Plus Query 25795 GCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAAC 25854 || ||||| ||||| || |||| | | |||||| |||||| ||| ||||||||| Sbjct 17812 GCTATCGATCACATTCCTTGCATACAAAAGAAGGCAGAGTGGGCAATGCGCTGGATCAAC 17871 Query 25855 -AGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTT 25913 | | || || | ||||| ||| | || || |||||||||||||||||||| ||||| Sbjct 17872 GATTCGGA---CT-CTTTTGGAGAGAGACTCGTTGCCTTTGCTGCTGTGGAGGGTATCTT 17927 Query 25914 TTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGAC-CATG 25965 || ||||| || ||| ||||||| ||||| ||| || ||||||| |||| Sbjct 17928 CTTTTCTGGTTCCTTCTGC-TCCATCTTTTGGCTGAAGAAG-AGGGGACTCATG 17979 >seq1441 Length=33442 Score = 84.2 bits (92), Expect = 4e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGG 221773 ||||| || ||||| || ||||| |||| || |||| || ||||| || || | | Sbjct 2458 GCCAGATTGCACACCGCAACCTCATCCTGCGCAGTGTACTCCATAATCTCGGTGCACAAG 2399 Query 221774 TTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTG 221833 ||||| |||||||||| || |||| | || || ||| | ||||| ||||||||| Sbjct 2398 TTGCTAGACTTGATGGTTCCGAGGTTCTGTTGGTTGCTCTTTCTGTTGGCGGCGTCCTTG 2339 Query 221834 TAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAG 221867 ||||||||| | || || ||||| | ||||| Sbjct 2338 TAGAGCATATAAGGTGTTCCGGTCTCAATCTGAG 2305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928814879586880