Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq1024 109 5e-19 seq1239 96.9 3e-15 seq593 87.8 2e-12 >seq1024 Length=14032 Score = 109 bits (120), Expect = 5e-19 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610 || |||||||| || ||||| ||| | || || || || ||||| || || || Sbjct 13778 AACATGCAAATCTTCGTAAAGACACTCACAGGAAAGACAATTACACTTGAGGTCGAGTCT 13837 Query 28611 TCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGAT 28670 ||||| || | | | || |||| || ||| |||||||||||| | || || Sbjct 13838 TCAGATACCATCGACAATGTCAAAGCCAAGATCCAAGACAAAGAGGGAATCCCACCCGAC 13897 Query 28671 CAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 28730 ||||||||||| ||||| || || || || |||||||| | |||| || ||| ||| Sbjct 13898 CAACAGAGACTCATCTTCGCCGGAAAGCAGTTGGAAGACGGCAGAACTTTGAGCGACTAT 13957 Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| || || ||||| ||||| ||| |||||||| | | ||||||| || Sbjct 13958 AACATCCAGAAGGAATCGACTCTCCACTTGGTATTACGTCTTAGAGGAGGAAT 14010 >seq1239 Length=29077 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 28668 GATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 28727 || ||||||||||| |||||||| || || || ||||||||| ||| | | ||| Sbjct 23228 GACCAACAGAGACTCATCTTTGCTGGAAAGCAGTTGGAAGATGGCCGCACTCTCTCAGAT 23169 Query 28728 TATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 || |||||||| || || |||||||| ||| |||| || |||||||||||||| Sbjct 23168 TACAACATTCAGAAGGAGTCTACTCTTCACTTGGTGTTGAGATTACGAGGAGG 23116 >seq593 Length=28782 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610 || |||||||| || || || ||| |||| || || || || || |||| ||| | Sbjct 16337 AACATGCAAATCTTCGTTAAGACACTAACTGGAAAGACAATCACACTCGAAGTGGAGAGT 16278 Query 28611 TCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGAT 28670 ||||| || | | || | ||| || ||| ||||| || ||| | || ||| Sbjct 16277 TCAGACACAATCGATAATGTAAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCCGAT 16218 Query 28671 CAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 28730 ||||||||||| ||||| || || || || |||||||| ||| || |||||| Sbjct 16217 CAACAGAGACTCATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGCACTTTGAGCGATTAC 16158 Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766 ||||| || || || |||||||| || |||||||| Sbjct 16157 AACATCCAGAAGGAGTCTACTCTCCATTTGGTATTA 16122 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| || || ||||| | || || || || |||||| ||| || |||| Sbjct 16107 AATGCAAATTTTCGTCAAAACTCTCACTGGCAAGACAATTACCTTAGAAGTCGAGTCTTC 16048 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 ||| || | | | || |||| || ||| |||||||||||| | || ||||| Sbjct 16047 AGATACCATCGACAATGTCAAAGCCAAGATCCAAGACAAAGAGGGAATCCCACCCGATCA 15988 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 |||||||| || || || || || ||||| || || | |||| | ||| || || Sbjct 15987 GCAGAGACTCATTTTCGCCGGAAAGCAATTAGAGGACGGCAGAACTTTAAGCGACTACAA 15928 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||| || || ||||| ||||| || | || ||| | | ||||||| || Sbjct 15927 CATCCAGAAGGAATCGACTCTCCATTTAGTCTTACGTCTCAGAGGAGGAAT 15877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425391439231683