Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq593 132 3e-25 seq1766 107 1e-17 seq2388 98.7 6e-15 seq2113 98.7 6e-15 seq1561 96.9 2e-14 seq289 96.9 2e-14 seq1378 93.3 3e-13 seq1044 91.5 1e-12 seq1564 87.8 1e-11 seq1344 86.0 4e-11 >seq593 Length=28782 Score = 132 bits (146), Expect = 3e-25 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 480554 AAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCT 480613 |||||| || ||||| ||||| ||| |||||| | || || |||| |||||||| Sbjct 15432 AAGACGCAGGACAAGGTGAAGAGTAGATTCTTTCTGGATGTTGTAGTCAGAAAGAGTTCT 15491 Query 480614 GTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTC 480673 | || ||||| |||||||| |||||||| || | ||||| || ||||| |||||||| Sbjct 15492 GCCGTCCTCAAGCTGCTTTCCGGCAAAAATGAGTCTCTGTTGGTCGGGAGGGATTCCTTC 15551 Query 480674 CTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGT 480733 ||||||||||||||| || ||| || |||||||| | | | ||| | ||| Sbjct 15552 CTTGTCTTGAATCTTGGCCTTAACATTGTCGATAGTATCTGAGGATTCTACTTCTAAGGT 15611 Query 480734 AATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || ||||||||||| || || ||||| || Sbjct 15612 GATGGTCTTGCCGGTGAGAGTTTTGACAAAAATCTG 15647 Score = 107 bits (118), Expect = 1e-17 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 ||||| || || |||||||| ||| || || || ||||| || | || |||| | Sbjct 28442 AGACGAAGAACCAGATGAAGAGTAGACTCCTTCTGAATGTTATAGTCTGAGAGGGTTCGG 28501 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 || || | ||||||||| || || || || | ||||||||||| |||||||||||| Sbjct 28502 CCGTCCTCTAATTGCTTTCCGGCGAAGATGAGTCTCTGTTGATCAGGGGGAATTCCTTCC 28561 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAAGGGT 480733 |||||||| ||||| ||| ||| || || ||||| | | | | | ||| || || Sbjct 28562 TTGTCTTGTATCTTGGCTTTTACATTGTCGATGGTATCTGAGCTCTCTA-CTTCGAGTGT 28620 Query 480734 AATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || ||||| ||||| ||||| ||||| Sbjct 28621 GATTGTCTTTCCAGTGAGGGTCTTGACGAAGATTTG 28656 Score = 98.7 bits (108), Expect = 6e-15 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 |||||||| || |||||||| ||| || || | ||| || || | ||||| | Sbjct 15661 AGACGGAGGACGAGATGAAGAGTAGACTCCTTCTGGATATTGTAGTCGGAAAGAGTACGT 15720 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 || ||||| |||||||| ||||| || || | |||||||| || || ||||||||| Sbjct 15721 CCGTCCTCAAGCTGCTTTCCGGCAAAGATGAGTCTCTGTTGATCGGGTGGGATTCCTTCC 15780 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGT 480733 |||||||||||||| || ||| || ||||| || | | | | ||| ||||| Sbjct 15781 TTGTCTTGAATCTTGGCCTTCACATTATCTATAGTGTCTGAACTCTCTA-CTTCGAGGGT 15839 Query 480734 AATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || | |||||| |||||||| || Sbjct 15840 GATTGTCTTTCCTGTCAAAGTCTTGACGAAAATCTG 15875 Score = 89.7 bits (98), Expect = 3e-12 Identities = 121/166 (73%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 480605 TAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGG 480664 || ||||||| || || | ||||||||| || ||||| || | || ||||| || || Sbjct 15939 TAAAGTTCTGCCGTCCTCTAATTGCTTTCCGGCGAAAATGAGTCTCTGCTGATCGGGTGG 15998 Query 480665 AATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGT-GTGTGAAG 480723 ||||| || |||||||| ||||| ||||||| || || ||||| | | | | Sbjct 15999 GATTCCCTCTTTGTCTTGGATCTTGGCTTTGACATTGTCGATGGTATCTGAAGACTCGAC 16058 Query 480724 TTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || |||| |||| || || || |||||||| || ||||||||||| Sbjct 16059 TTCTAAGG-TAATTGTCTTGCCAGTGAGAGTTTTGACGAAAATTTG 16103 >seq1766 Length=5059 Score = 107 bits (118), Expect = 1e-17 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 480558 CGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTA 480617 || || || |||||||| ||| || || || ||||| || | || |||| | Sbjct 4494 CGAAGAACGAGATGAAGAGTAGACTCCTTCTGAATGTTATAGTCTGAGAGGGTTCGGCCG 4553 Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 || || | ||||||||| |||||||| || | ||||||||||| ||||||||||||||| Sbjct 4554 TCCTCTAATTGCTTTCCGGCAAAAATGAGTCTCTGTTGATCAGGGGGAATTCCTTCCTTG 4613 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAAGGGTAAT 480736 ||||| ||||| ||| ||| || || || || | | | | | ||| || || || Sbjct 4614 TCTTGGATCTTGGCTTTTACATTGTCGATGGTGTCTGAGCTCTCTA-CTTCGAGTGTGAT 4672 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || ||||| ||||| ||||| ||||| Sbjct 4673 TGTCTTTCCAGTGAGGGTCTTGACGAAGATTTG 4705 Score = 86.0 bits (94), Expect = 4e-11 Identities = 113/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| || | ||||||||| || ||||| || | |||||||| || || ||||| ||||| Sbjct 4781 ATCCTCTAATTGCTTTCCGGCGAAAATGAGTCTCTGTTGATCGGGTGGGATTCCCTCCTT 4840 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAAGGGTAA 480735 |||||| ||||| ||| ||| || || || || | | | | | ||| ||||| | Sbjct 4841 GTCTTGTATCTTGGCTTTTACATTGTCGATGGTGTCTGAGCTCTCCA-CTTCGAGGGTGA 4899 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || || || | ||||||||||||||| || Sbjct 4900 TTGTCTTTCCAGTCAAAGTCTTAACGAAAATCTG 4933 >seq2388 Length=27108 Score = 98.7 bits (108), Expect = 6e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 474332 ATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTA 474391 || |||||||| | || || || ||| ||| || | || |||||||||| || Sbjct 26074 ATCGGTATTGACCTCGGCACAACATACTCTTGCGTTGGAGTATGGCAAAATGACCGTGTC 26133 Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451 || || || ||||| |||||||| || ||||| ||||||||||| ||| |||| ||||| Sbjct 26134 GAGATTATCGCCAACGACCAAGGAAACAGAACCACACCATCATACGTTGCTTTCACTGAC 26193 Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAA 474480 | || | ||| || |||||||| ||||| Sbjct 26194 AGCGACCGTCTCATCGGAGATGCCGCTAA 26222 >seq2113 Length=21246 Score = 98.7 bits (108), Expect = 6e-15 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 |||||||| || || ||||| || || || | ||| || |||| ||||| | Sbjct 21139 AGACGGAGGACGAGGTGAAGAGTGGACTCCTTCTGGATATTGTAGTCAGAGAGAGTACGT 21080 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 || || ||||||||||| || || || | | |||||||||||| |||||||| ||| Sbjct 21079 CCGTCCTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGTTGATCAGGGGGAATTCCCTCC 21020 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAAGGGT 480733 |||||||| ||||| ||| || || || || |||| | | | | || ||||| Sbjct 21019 TTGTCTTGGATCTTCGCTTTTACGTTGTCGATGGTGTCAGAGCTCTCGA-CCTCGAGGGT 20961 Query 480734 AATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || |||||||| ||||| ||||| || || Sbjct 20960 GATAGTCTTTCCGGTGAGGGTCTTGACGAAGATCTG 20925 >seq1561 Length=19091 Score = 96.9 bits (106), Expect = 2e-14 Identities = 139/191 (73%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 474687 CCAAAATGAAACAAACCGC-GAGCTCATATCTT-GGACAAGAAGTAACTGATGCAGTAAT 474744 |||| ||||| ||||||| ||| |||| |||| |||| ||| | ||| || || Sbjct 4969 CCAAGATGAAGGAAACCGCAGAG-TCAT-TCTTCGGACGCACAGTCAAGTCTGCTGTCAT 5026 Query 474745 TACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAAT 474804 || || || ||||| || || ||||| ||| | ||||| || || || || |||||||| Sbjct 5027 CACCGTCCCTGCATACTTCAACGATTCCCAAAGACAAGCCACAAAGGACGCAGGAAGAAT 5086 Query 474805 TGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGG 474864 || ||| | |||| |||||||||||| || ||||| || || || ||||| | ||| Sbjct 5087 CGCCGGTTTCGATGTCGAACGTATTATTAACGAGCCAACCGCCGCTGCTCTTGCCTTTGG 5146 Query 474865 TCTTGATAAGA 474875 ||| | |||| Sbjct 5147 TCTGAAGAAGA 5157 >seq289 Length=20159 Score = 96.9 bits (106), Expect = 2e-14 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 474330 CAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAG 474389 ||||||| || ||| | || || || ||| || || | || ||||| |||| || Sbjct 608 CAATTGGAATCGATCTCGGCACAACATACTCCTGCGTTGGAGTGTGGCAGAATGACCGAG 549 Query 474390 TAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTG 474449 ||||||| || ||||| |||||||| || ||||| ||||||||||| || | ||||| | Sbjct 548 TAGAAATCATCGCCAACGACCAAGGAAACAGAACCACACCATCATACGTCGCCTTTACGG 489 Query 474450 AAACTGAACATCTTATTGGAGATGCTGCTAA 474480 | || || | ||| || || ||||| ||||| Sbjct 488 ACACCGACCGTCTCATCGGTGATGCCGCTAA 458 >seq1378 Length=10532 Score = 93.3 bits (102), Expect = 3e-13 Identities = 147/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 480563 TACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTTC 480622 ||||||||| | |||| || || || ||||| || | || || | | ||| || Sbjct 10450 TACAAGATGTAATGTAGACTCCTTCTGAATGTTATAGTCTGAGAGGGTACGGCCATCCTC 10391 Query 480623 AAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTG 480682 || |||||||| ||||| || || | ||||| || || |||||||||||||||||||| Sbjct 10390 GAGCTGCTTTCCGGCAAAGATGAGTCTCTGTTGGTCGGGGGGAATTCCTTCCTTGTCTTG 10331 Query 480683 AATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTT 480741 ||||| ||||| || || || |||| || | | || | ||| || || | Sbjct 10330 GATCTTGGCCTTGACGTTATCGATGGTGTCAGATGATTCGA-CCTCTAAGGTGATGGTCT 10272 Query 480742 TACCGGTGAGAGTCTTAACGAAAATTTG 480769 | |||||||||||||| ||||| || || Sbjct 10271 TTCCGGTGAGAGTCTTCACGAAGATCTG 10244 >seq1044 Length=18651 Score = 91.5 bits (100), Expect = 1e-12 Identities = 114/154 (74%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| |||||||||||||| || || || | ||||| || || || ||||| ||||| Sbjct 18524 ATCTTCCAGTTGCTTTCCAGCGAAGATGAGTCTCTGTTGGTCGGGTGGGATTCCCTCCTT 18465 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAA 480735 |||||| ||||| ||| ||| || || ||||| | | | | || ||| || | Sbjct 18464 GTCTTGTATCTTGGCTTTTACATTATCGATGGTATCTGAACTCTCGACTTCCAA-TGTGA 18406 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || |||||||| ||||| ||||| ||||| Sbjct 18405 TTGTCTTGCCGGTGAGTGTCTTTACGAAGATTTG 18372 >seq1564 Length=26684 Score = 87.8 bits (96), Expect = 1e-11 Identities = 127/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || || |||| ||||| | | || ||||| |||||||| ||||||||||| | ||| Sbjct 11776 TTGTAGTCAGAGAGAGTGCGGCCGTCCTCAAGCTGCTTTCCGGCAAAAATAAGTCTCTGT 11717 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || || || || ||||| ||||||||||| ||||| ||| || || || |||||| Sbjct 11716 TGGTCGGGGGGGATTCCCTCCTTGTCTTGGATCTTGGCTTTTACGTTGTCGATGGTATCA 11657 Query 480714 GTG-TGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | | | || ||||| || || || || || | |||||| ||||| || || Sbjct 11656 GAGCTCTCGA-CCTCGAGGGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTG 11601 >seq1344 Length=40060 Score = 86.0 bits (94), Expect = 4e-11 Identities = 113/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| || ||||||||||| || || || || | ||||| || || |||||||||||||| Sbjct 24053 ATCCTCCAGTTGCTTTCCGGCGAAGATGAGTCTCTGTTGGTCGGGGGGAATTCCTTCCTT 24112 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAA 480735 ||||| ||||| ||| ||| || ||||| || | | | | || ||| ||| | Sbjct 24113 ATCTTGGATCTTGGCTTTAACATTGTCGATAGTGTCTGAAGATTCGACTTCCAA-GGTGA 24171 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || ||||||||||| || || || ||||| Sbjct 24172 TTGTCTTGCCGGTGAGAGTTTTGACAAAGATTTG 24205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268068659966396