Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1441 111 2e-19 seq455 107 2e-18 seq1881 89.7 6e-13 >seq1441 Length=33442 Score = 111 bits (122), Expect = 2e-19 Identities = 232/343 (68%), Gaps = 7/343 (2%) Strand=Plus/Plus Query 75305 TTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGT 75364 |||| ||||| ||||| || || ||||| |||| ||||||||||| |||||||| Sbjct 1663 TTCACACACGCCACACCCACACTTTTCAACTCTGGCACACCAAGACCTCAGATGTCTTCC 1722 Query 75365 TGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAG 75424 ||||||||| | | || |||||||| || ||| | |||||||| | ||||| | | || Sbjct 1723 TGCTTCCTTTTGGACATGAAGGAGGATTCTATCGAGGGTATCTACGACACTCTAAAGCAG 1782 Query 75425 TGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGC- 75483 || || | ||||| || | || || || || || || ||| | | ||||| Sbjct 1783 TGCGCTCTCATCTCTAAATCTGCCGGAGGCATCGGTCTGTCTGCCCACAAGATCAGAGCT 1842 Query 75484 -CAATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTC 75542 || | | | || | || ||||||||| || |||| | | || |||||| Sbjct 1843 GCAGACAGTTAC--ATCAGAGGAACAAATGGTGCCTCTAATGGACTCGTCCCCATGCTTA 1900 Query 75543 GCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCGGGGCGT---CGCAAGGGGTCCA 75599 | || || || | ||| || || ||||| | |||| || || | ||||| || Sbjct 1901 GAGTCTTCAATGACACTGCACGTTATGTCGACCAAGGAGGTGGTAAGAGGAAGGGTGCCT 1960 Query 75600 TCGCGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTT 75642 | || || || |||| |||||||||||||| |||| ||||| Sbjct 1961 TTGCCGTTTATCTGGAGCCATGGCATGCCGACATCACCGAGTT 2003 >seq455 Length=31299 Score = 107 bits (118), Expect = 2e-18 Identities = 130/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 65067 CTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTC 65126 ||| |||| || ||||| | || || || || ||||| ||||||||||| || || Sbjct 8732 CTCTTTCGGAGAACGCCTCGTCGCTTTCGCTGCCGTAGAGGGCATCTTCTTCTCTGGTTC 8673 Query 65127 ATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAA 65186 ||||| | || | ||||||||||||| | |||||||||||||| || | | ||||| Sbjct 8672 CTTCTGTTCCATCTTTTGGTTGAAGAAGAGAGGTCTCATGCCAGGTCTTTCCACATCAAA 8613 Query 65187 TGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAA 65243 ||| ||||||| || || || || |||||| || |||||| ||||||||| Sbjct 8612 CGAATTTATTTCTCGCGACGAAGGACTCCACTGCGACTTTGCCTGCCTGCTCTTCAA 8556 >seq1881 Length=25171 Score = 89.7 bits (98), Expect = 6e-13 Identities = 138/196 (70%), Gaps = 7/196 (4%) Strand=Plus/Plus Query 65023 AAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCG--CTCCTTCGCCGAGC 65080 |||||||| | ||||||||| ||| | ||| | ||| ||| || | ||| Sbjct 17839 AAGAAGGCAGAGTGGGCAATGCGCTGGAT-----CAACGATTCGGACTCTTTTGGAGAGA 17893 Query 65081 GCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTT 65140 | || |||| ||||| |||||||||||||||||| || || || |||||| | || | Sbjct 17894 GACTCGTTGCCTTTGCTGCTGTGGAGGGTATCTTCTTTTCTGGTTCCTTCTGCTCCATCT 17953 Query 65141 ATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCC 65200 |||| |||||||| |||| |||||| || || | ||||||||| | || || Sbjct 17954 TTTGGCTGAAGAAGAGGGGACTCATGGAGGGTCTTGGAAAATCAAATGAATTCATATCAA 18013 Query 65201 GAGATGAGGGTCTCCA 65216 ||||||| || || || Sbjct 18014 GAGATGAAGGGCTACA 18029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596550383001760