Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq1766 154 3e-32 seq593 150 3e-31 seq343 136 7e-27 seq717 132 9e-26 seq1378 105 1e-17 seq1825 91.5 3e-13 seq1564 89.7 9e-13 seq2113 84.2 4e-11 >seq1766 Length=5059 Score = 154 bits (170), Expect = 3e-32 Identities = 177/238 (74%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||||| || |||||||| ||||| || ||||| | |||| ||| || ||| || Sbjct 4472 AATTTATTGTCCTCCTCTCAAGCGAAGAACGAGATGAAGAGTAGACTCCTTCTGAATGTT 4531 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 |||||| || | |||| || |||||||| |||||||||||||| | ||||||||| Sbjct 4532 ATAGTCTGAGAGGGTTCGGCCGTCCTCTAATTGCTTTCCGGCAAAAATGAGTCTCTGTTG 4591 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 |||||| || |||||||| || ||||| || |||| ||||| ||| || || || || Sbjct 4592 ATCAGGGGGAATTCCTTCCTTGTCTTGGATCTTGGCTTTTACATTGTCGATGGTGTCTGA 4651 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||| ||||| || || || || || || || || || || || || ||||||||| Sbjct 4652 GCTCTCTACTTCGAGTGTGATTGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCATT 4709 Score = 105 bits (116), Expect = 1e-17 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 193164 GTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCG 193223 |||| ||| || |||||| |||||| | || | ||| |||||||| |||||| Sbjct 4740 GTAGACTCCTTTTGAATATTGTAGTCGCTAAGTGTGCGTCCATCCTCTAATTGCTTTCCG 4799 Query 193224 GCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTT 193283 || ||||| | |||||||||||| || || ||||| || || |||||||| |||| |||| Sbjct 4800 GCGAAAATGAGTCTCTGTTGATCGGGTGGGATTCCCTCCTTGTCTTGTATCTTGGCTTTT 4859 Query 193284 ATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTT 193343 | ||| || || || || ||| ||||| || || || || || || || | || Sbjct 4860 ACATTGTCGATGGTGTCTGAGCTCTCCACTTCGAGGGTGATTGTCTTTCCAGTCAAAGTC 4919 Query 193344 TTTACAAATATTTGCATT 193361 || || || || |||||| Sbjct 4920 TTAACGAAAATCTGCATT 4937 >seq593 Length=28782 Score = 150 bits (166), Expect = 3e-31 Identities = 176/238 (74%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || || ||||| | ||||| |||||||| | |||| ||| || ||| || Sbjct 28423 AATTTGCATTCCTCCTCTGAGACGAAGAACCAGATGAAGAGTAGACTCCTTCTGAATGTT 28482 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 |||||| || | |||| || |||||||| |||||||| || || | ||||||||| Sbjct 28483 ATAGTCTGAGAGGGTTCGGCCGTCCTCTAATTGCTTTCCGGCGAAGATGAGTCTCTGTTG 28542 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 |||||| || |||||||| || |||||||| |||| ||||| ||| || ||||| || Sbjct 28543 ATCAGGGGGAATTCCTTCCTTGTCTTGTATCTTGGCTTTTACATTGTCGATGGTATCTGA 28602 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||| ||||| || || || || || || || || || || || || ||||||||| Sbjct 28603 GCTCTCTACTTCGAGTGTGATTGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCATT 28660 Score = 118 bits (130), Expect = 2e-21 Identities = 167/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 193126 TTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTAT 193185 ||||| || ||||| | || || || || || | |||| ||||| || || | Sbjct 15416 TTTATTGTCCTCCTCTAAGACGCAGGACAAGGTGAAGAGTAGATTCTTTCTGGATGTTGT 15475 Query 193186 AGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGAT 193245 |||| || | ||||| || || | || |||||||||||||| | ||||||||| | Sbjct 15476 AGTCAGAAAGAGTTCTGCCGTCCTCAAGCTGCTTTCCGGCAAAAATGAGTCTCTGTTGGT 15535 Query 193246 CAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAG 193305 | ||||| |||||||| || ||||| || |||| || | ||| |||||||| || | Sbjct 15536 CGGGAGGGATTCCTTCCTTGTCTTGAATCTTGGCCTTAACATTGTCGATAGTATCTGAGG 15595 Query 193306 ACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | || ||||||| || || || || || || || ||||| ||||| || ||||| Sbjct 15596 ATTCTACTTCTAAGGTGATGGTCTTGCCGGTGAGAGTTTTGACAAAAATCTGCAT 15650 Score = 109 bits (120), Expect = 1e-18 Identities = 168/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || |||||||| | || | ||||| ||| | |||| ||| || || || Sbjct 16098 AATTTGCATTCCACCTCTAAGACGTAATACCAAATGGAGAGTAGACTCCTTCTGGATGTT 16157 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || ||| || || | || || || || |||||||| || || | ||||||||| Sbjct 16158 GTAATCGCTCAAAGTGCGGCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGTCTCTGTTG 16217 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || |||||||| || ||||| || |||| |||| ||| || || || || Sbjct 16218 ATCGGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTTACATTATCGATTGTGTCTGA 16277 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 | ||| ||||| || || || || || || ||||| || || || || |||||||| || Sbjct 16278 ACTCTCCACTTCGAGTGTGATTGTCTTTCCAGTTAGTGTCTTAACGAAGATTTGCATGTT 16337 Score = 105 bits (116), Expect = 1e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || ||||| | || || || ||||| | |||| ||| || ||||| |||||| Sbjct 15649 ATCCCTCCTCTGAGACGGAGGACGAGATGAAGAGTAGACTCCTTCTGGATATTGTAGTCG 15708 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | || || | || ||||||||||| || | |||||||||||| || Sbjct 15709 GAAAGAGTACGTCCGTCCTCAAGCTGCTTTCCGGCAAAGATGAGTCTCTGTTGATCGGGT 15768 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || |||||||| || ||||| || |||| || | ||| ||||| || ||| ||| Sbjct 15769 GGGATTCCTTCCTTGTCTTGAATCTTGGCCTTCACATTATCTATAGTGTCTGAACTCTCT 15828 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||| || || || || || ||||| | || || || || || |||||| Sbjct 15829 ACTTCGAGGGTGATTGTCTTTCCTGTCAAAGTCTTGACGAAAATCTGCATT 15879 >seq343 Length=26413 Score = 136 bits (150), Expect = 7e-27 Identities = 173/238 (73%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||||| || |||||||| ||||| || ||||| | |||| ||| || ||| || Sbjct 312 AATTTATTGTCCTCCTCTCAAGCGAAGAACGAGATGAAGAGTAGACTCCTTCTGAATGTT 253 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 |||||| || | || | ||| || | || |||||||||||||| | ||||||||| Sbjct 252 ATAGTCTGAGAGGGTACGGCCATCCTCGAGCTGCTTTCCGGCAAAAATGAGTCTCTGTTG 193 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || || |||||||| |||||||| |||| ||||| || ||||| || || Sbjct 192 ATCGGGTGGGATGCCTTCTTTGTCTTGTATCTTGGCTTTTACGTTGTCGATAGTGTCTGA 133 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 | ||| ||||| || || || || || || || | || || || || || |||||| Sbjct 132 ACTCTCTACTTCGAGGGTGATTGTCTTTCCAGTCAAAGTCTTGACGAAAATCTGCATT 75 >seq717 Length=13837 Score = 132 bits (146), Expect = 9e-26 Identities = 169/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || ||||| | ||||| || || || | || | |||||| || || |||||| Sbjct 161 ATTCCTCCTCTGAGACGAAGAACAAGGTGGAGGGTGGACTCTTTTTGGATGTTGTAGTCG 220 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| ||||| || |||||||| || || |||||||||||||| ||| Sbjct 221 GAGAGGGTGCGCCCATCCTCTAACTGCTTTCCGGCGAAGATCAATCTCTGTTGATCGGGA 280 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || |||||||| || ||||| || |||| || | || || || ||||| ||||| Sbjct 281 GGGATTCCTTCCTTGTCTTGAATCTTGGCCTTGACGTTATCGATGGTGTCGGAGGACTCT 340 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||||| | ||| ||||| || ||||| || || ||||| || || ||||| || Sbjct 341 ACTTCCAAAGTAATAGTCTTTCCTGTGAGGGTCTTTACGAAAATCTGCATGTT 393 Score = 95.1 bits (104), Expect = 2e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || ||||||||||| || | |||||||||||| || || |||||||| || ||||| || Sbjct 17 TGCTTTCCGGCAAAGATGAGTCTCTGTTGATCGGGGGGAATTCCTTCCTTGTCTTGAATC 76 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| ||| | || || || ||||| ||||| || || || || || || || || Sbjct 77 TTGGCTTTAACGTTGTCGATGGTGTCGGAGGACTCGACCTCCAGGGTAATCGTCTTTCCA 136 Query 193335 GTTAGCGTTTTTACAAATATTTGCATT 193361 || | || || || ||||| |||||| Sbjct 137 GTCAAAGTCTTGACGAATATCTGCATT 163 >seq1378 Length=10532 Score = 105 bits (116), Expect = 1e-17 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || ||||| |||| | ||| ||||| ||||||| ||| || ||| |||||||| Sbjct 10470 ATGCCTCCTCTTAATCTCAATACAAGATGTAATGTAGACTCCTTCTGAATGTTATAGTCT 10411 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || | || ||||||||||| || | ||||||||| || || Sbjct 10410 GAGAGGGTACGGCCATCCTCGAGCTGCTTTCCGGCAAAGATGAGTCTCTGTTGGTCGGGG 10351 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || |||||||| || ||||| || |||| || | || || || || || || || Sbjct 10350 GGAATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTATCGATGGTGTCAGATGATTCG 10291 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || |||| || || || || || || || || || || || || ||||| || Sbjct 10290 ACCTCTAAGGTGATGGTCTTTCCGGTGAGAGTCTTCACGAAGATCTGCATGTT 10238 >seq1825 Length=10169 Score = 91.5 bits (100), Expect = 3e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||||| || |||||||| ||||| || ||||| | || | ||| || || || Sbjct 156 AATTTATTGTCCTCCTCTCAAGCGAAGAACGAGATGAAGAGTCGACTCCTTCTGGATGTT 97 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||||| | || | ||| || | || |||||||||||||| | ||||||||| Sbjct 96 ATAGTCGCTCAGTGTGCGTCCATCCTCGAGCTGCTTTCCGGCAAAAATGAGTCTCTGTTG 37 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGG 193278 ||| || || |||||||| || ||||| || |||| Sbjct 36 ATCGGGTGGGATTCCTTCCTTGTCTTGAATCTTGG 2 >seq1564 Length=26684 Score = 89.7 bits (98), Expect = 9e-13 Identities = 162/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || || ||||||| ||||| |||| || | || | ||| || ||| || Sbjct 11833 ATTTGCATTCCTCCTCTCAGACGAAGGACCAAGTGGAGGGTGGACTCCTTCTGAATGTTG 11774 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| || | || | || || | || |||||||||||||| | ||||||||| Sbjct 11773 TAGTCAGAGAGAGTGCGGCCGTCCTCAAGCTGCTTTCCGGCAAAAATAAGTCTCTGTTGG 11714 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || ||||| || || ||||| || |||| ||||| || || ||||| || Sbjct 11713 TCGGGGGGGATTCCCTCCTTGTCTTGGATCTTGGCTTTTACGTTGTCGATGGTATCAGAG 11654 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||| || || || || || || || || || | || || || || || |||||| Sbjct 11653 CTCTCGACCTCGAGGGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCATT 11597 >seq2113 Length=21246 Score = 84.2 bits (92), Expect = 4e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||| |||||||| || || ||||| ||||||||||| || ||||| || || Sbjct 21076 TCCTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGTTGATCAGGGGGAATTCCCTCCTTG 21017 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || || | ||||| || || || || || ||| || || || || ||| Sbjct 21016 TCTTGGATCTTCGCTTTTACGTTGTCGATGGTGTCAGAGCTCTCGACCTCGAGGGTGATA 20957 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || || || || || || || |||||| Sbjct 20956 GTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCATT 20921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899625419882640