Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq343 114 2e-20 seq1239 109 8e-19 seq593 96.9 5e-15 seq1378 95.1 2e-14 >seq343 Length=26413 Score = 114 bits (126), Expect = 2e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || || | || || ||||||||||| || || || | ||||| || ||| Sbjct 75 AATGCAGATTTTCGTCAAGACTTTGACTGGAAAGACAATCACCCTCGAAGTAGAGAGTTC 134 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| ||||| ||| || |||||||| ||||||||||| || || || || Sbjct 135 AGACACTATCGACAACGTAAAAGCCAAGATACAAGACAAAGAAGGCATCCCACCCGATCA 194 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| ||| | |||| |||||| ||||||||||| ||| | | || | ||||| ||||| Sbjct 195 ACAGAGACTCATTTTTGCCGGAAAGCAGCTCGAGGATGGCCGTACCCTCTCAGACTATAA 254 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || || ||| | || |||||| | || | | || ||||| || Sbjct 255 CATTCAGAAGGAGTCTACTCTTCATCTCGTTCTTCGCTTGAGAGGAGG 302 >seq1239 Length=29077 Score = 109 bits (120), Expect = 8e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || ||||| || ||| | ||||||||||| ||||| || || || || || || || Sbjct 23573 AACATGCAGATCTTTGTAAAAACATTGACCGGAAAGACCATCACTTTGGAGGTGGAGAGC 23514 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || || | || ||||| || || || || || || || ||||| ||||| || Sbjct 23513 TCAGACACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGAC 23454 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 ||||||||| | |||| ||||| ||||| ||||| || ||| || | ||||| || Sbjct 23453 CAACAAAGACTCATTTTCGCCGGAAAGCAACTCGAGGACGGCAGGACCCTCTCAGACTAC 23394 Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 ||||| |||||| | || ||||| | ||||| ||||| ||||| || Sbjct 23393 AATATCCAGAAAGAGTCCACCCTTCACCTCGTGTTGAGATTGAGAGGAGG 23344 >seq593 Length=28782 Score = 96.9 bits (106), Expect = 5e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || | ||||| | ||||| || || ||||| ||||||||||| ||| Sbjct 16107 AATGCAAATTTTCGTCAAAACTCTCACTGGCAAGACAATTACCTTAGAAGTCGAGTCTTC 16048 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| || || || ||| || || ||||| ||||| || || || || || || Sbjct 16047 AGATACCATCGACAATGTCAAAGCCAAGATCCAAGACAAAGAGGGAATCCCACCCGATCA 15988 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || ||| | |||| ||||| ||||| | || || |||||||||| || || || Sbjct 15987 GCAGAGACTCATTTTCGCCGGAAAGCAATTAGAGGACGGCAGAACTTTAAGCGACTACAA 15928 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || || || |||| || |||||||| ||| | | ||||| || Sbjct 15927 CATCCAGAAGGAATCGACTCTCCATTTAGTCTTACGTCTCAGAGGAGG 15880 >seq1378 Length=10532 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || ||||| || || | || || | || ||||| || || || ||||| |||||| Sbjct 10238 AACATGCAGATCTTCGTGAAGACTCTCACCGGAAAGACCATCACCTTAGAGGTCGAATCA 10297 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||||| | || ||||| || || || ||||| || ||||| || || || || Sbjct 10298 TCTGACACCATCGATAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCCCCCGAC 10357 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 ||||| ||| | || | |||||| ||||||||||| ||| | | || | ||||| ||| Sbjct 10358 CAACAGAGACTCATCTTTGCCGGAAAGCAGCTCGAGGATGGCCGTACCCTCTCAGACTAT 10417 Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || || || ||| | || | ||| | || || ||||||||||| || Sbjct 10418 AACATTCAGAAGGAGTCTACATTACATCTTGTATTGAGATTAAGAGGAGG 10467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731848424573200