Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq593 141 2e-28 seq1766 136 8e-27 seq1024 114 3e-20 seq1344 105 1e-17 seq343 105 1e-17 seq717 96.9 7e-15 seq2113 84.2 4e-11 >seq593 Length=28782 Score = 141 bits (156), Expect = 2e-28 Identities = 171/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||||||||||||||| ||||| | ||||| ||| || ||| || ||||| Sbjct 16105 ATTCCACCTCTAAGACGTAATACCAAATGGAGAGTAGACTCCTTCTGGATGTTGTAATCG 16164 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || || | || ||||| || || || || ||||| | |||||||||||| ||| Sbjct 16165 CTCAAAGTGCGGCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGTCTCTGTTGATCGGGT 16224 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| || ||||| || || ||||||||| || | ||||| || Sbjct 16225 GGGATTCCTTCCTTGTCTTGGATCTTGGCCTTTACATTATCGATTGTGTCTGAACTCTCC 16284 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||||| || || || || || ||||||| ||| |||| || || ||||| || Sbjct 16285 ACTTCGAGTGTGATTGTCTTTCCAGTTAGTGTCTTAACGAAGATTTGCATGTT 16337 Score = 120 bits (132), Expect = 6e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || ||||| ||||| | || | ||| | ||||| ||| || |||||| || || Sbjct 15649 ATCCCTCCTCTGAGACGGAGGACGAGATGAAGAGTAGACTCCTTCTGGATATTGTAGTCG 15708 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || ||| | || || | || || || |||||||| | |||||||||||| ||| Sbjct 15709 GAAAGAGTACGTCCGTCCTCAAGCTGCTTTCCGGCAAAGATGAGTCTCTGTTGATCGGGT 15768 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| || ||||| || || || |||||| ||||| ||||| ||| Sbjct 15769 GGGATTCCTTCCTTGTCTTGAATCTTGGCCTTCACATTATCTATAGTGTCTGAACTCTCT 15828 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| || || || || || || || || || || | || ||||||||| Sbjct 15829 ACTTCGAGGGTGATTGTCTTTCCTGTCAAAGTCTTGACGAAAATCTGCATT 15879 Score = 120 bits (132), Expect = 6e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || ||||| ||||| | || | ||| | ||||| ||| || || ||||| || Sbjct 28430 ATTCCTCCTCTGAGACGAAGAACCAGATGAAGAGTAGACTCCTTCTGAATGTTATAGTCT 28489 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||||| | || || ||||| || || || ||||| | ||||||||||||||| Sbjct 28490 GAGAGGGTTCGGCCGTCCTCTAATTGCTTTCCGGCGAAGATGAGTCTCTGTTGATCAGGG 28549 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| || |||||||| || ||||||||| || | |||||| ||| Sbjct 28550 GGAATTCCTTCCTTGTCTTGTATCTTGGCTTTTACATTGTCGATGGTATCTGAGCTCTCT 28609 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| || || || || || ||||| | || || | || || |||||| Sbjct 28610 ACTTCGAGTGTGATTGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCATT 28660 Score = 118 bits (130), Expect = 2e-21 Identities = 171/240 (71%), Gaps = 1/240 (0%) Strand=Plus/Plus Query 192297 TAGTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGAT 192356 |||||| || | || ||||||||||| | || | || | ||||| ||||| ||| Sbjct 15412 TAGTTTTATTGT-CCTCCTCTAAGACGCAGGACAAGGTGAAGAGTAGATTCTTTCTGGAT 15470 Query 192357 ATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTG 192416 || || ||||| | |||| | || || | || || || ||||| || | |||||| Sbjct 15471 GTTGTAGTCAGAAAGAGTTCTGCCGTCCTCAAGCTGCTTTCCGGCAAAAATGAGTCTCTG 15530 Query 192417 TTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATC 192476 ||| || || || |||||||| || ||||| || || || ||||| |||| ||| Sbjct 15531 TTGGTCGGGAGGGATTCCTTCCTTGTCTTGAATCTTGGCCTTAACATTGTCGATAGTATC 15590 Query 192477 TGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||| ||||||||||||| || ||||| || || || | ||||| | ||| |||||||| Sbjct 15591 TGAGGATTCTACTTCTAAGGTGATGGTCTTGCCGGTGAGAGTTTTGACAAAAATCTGCAT 15650 Score = 84.2 bits (92), Expect = 4e-11 Identities = 98/127 (77%), Gaps = 4/127 (3%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 || || ||||| |||||||| ||||| || | ||||| ||| ||| || ||||| || || Sbjct 28658 ATTCCTCCTCTGAGACGTAAAACTAAGTGGAGAGTAGACTCCTTTTGA-ATATTGTAGTC 28716 Query 192366 AGATAA-TGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAG 192424 | ||| ||| ||| |||| || ||||| || || || || || | |||||||||||| | Sbjct 28717 -GCTAAGTGTGCGTCCATCCTCTAATTGCTTTCCGGCGAAAATGAGTCTCTGTTGATCGG 28775 Query 192425 GTGGTAT 192431 |||| || Sbjct 28776 GTGGGAT 28782 >seq1766 Length=5059 Score = 136 bits (150), Expect = 8e-27 Identities = 173/233 (74%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 || || ||||| |||||||| ||||| || | ||||| ||| ||| || ||||| || || Sbjct 4707 ATTCCTCCTCTGAGACGTAAAACTAAGTGGAGAGTAGACTCCTTTTGA-ATATTGTAGTC 4765 Query 192366 AGATAA-TGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAG 192424 | ||| ||| ||| |||| || ||||| || || || || || | |||||||||||| | Sbjct 4766 -GCTAAGTGTGCGTCCATCCTCTAATTGCTTTCCGGCGAAAATGAGTCTCTGTTGATCGG 4824 Query 192425 GTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATT 192484 |||| ||||| || || |||||||| || ||||||||| || | ||||| | Sbjct 4825 GTGGGATTCCCTCCTTGTCTTGTATCTTGGCTTTTACATTGTCGATGGTGTCTGAGCTCT 4884 Query 192485 CTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 | ||||| || || || || || ||||| || || |||| || ||||||||| Sbjct 4885 CCACTTCGAGGGTGATTGTCTTTCCAGTCAAAGTCTTAACGAAAATCTGCATT 4937 Score = 100 bits (110), Expect = 6e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || ||||| | || | || | ||| | ||||| ||| || || ||||| || || Sbjct 4482 CCTCCTCTCAAGCGAAGAACGAGATGAAGAGTAGACTCCTTCTGAATGTTATAGTCTGAG 4541 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | ||||| | || || ||||| || || ||||| || | ||||||||||||||| || Sbjct 4542 AGGGTTCGGCCGTCCTCTAATTGCTTTCCGGCAAAAATGAGTCTCTGTTGATCAGGGGGA 4601 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 |||||||| || ||||| || || ||||||||| || | ||||| |||||| Sbjct 4602 ATTCCTTCCTTGTCTTGGATCTTGGCTTTTACATTGTCGATGGTGTCTGAGCTCTCTACT 4661 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || || || || || ||||| | || || | || || |||||| Sbjct 4662 TCGAGTGTGATTGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCATT 4709 >seq1024 Length=14032 Score = 114 bits (126), Expect = 3e-20 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || ||||||||||||||||| || || | ||| | || || ||| ||||| || Sbjct 14010 ATTCCTCCTCTAAGACGTAATACCAAGTGGAGAGTCGATTCCTTCTGGATGTTATAGTCG 13951 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || |||| | || ||||| || || || || ||||| | ||||||||| || ||| Sbjct 13950 CTCAAAGTTCTGCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGTCTCTGTTGGTCGGGT 13891 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| ||||| ||||| || || ||| ||||| || | |||||| || || Sbjct 13890 GGGATTCCCTCTTTGTCTTGGATCTTGGCTTTGACATTGTCGATGGTATCTGAAGACTCG 13831 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || || ||||| || || || || | ||| || | || || ||||| || Sbjct 13830 ACCTCAAGTGTAATTGTCTTTCCTGTGAGTGTCTTTACGAAGATTTGCATGTT 13778 >seq1344 Length=40060 Score = 105 bits (116), Expect = 1e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || ||||| |||||||| ||||| || | || | ||| || ||| ||||| ||| Sbjct 24207 ATTCCTCCTCTGAGACGTAAAACTAAGTGGAGCGTGGACTCCTTCTGGATGTTATAGTCA 24266 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || ||| | || || | ||| || || || || || | ||||||||| || || Sbjct 24267 GAGAGAGTACGTCCGTCCTCGAGTTGCTTTCCGGCGAAAATGAGTCTCTGTTGGTCGGGG 24326 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| || || ||||| |||||| || || || || | ||||| |||||| Sbjct 24327 GGGATTCCCTCCTTGTCTTGAATTTTAGCCTTGACGTTGTCGATGGTGTCTGAAGATTCT 24386 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 ||||| || || || || || || || | ||| || | || || ||| Sbjct 24387 ACTTCGAGGGTGATTGTCTTTCCTGTAAGTGTCTTTACGAAGATTTGC 24434 >seq343 Length=26413 Score = 105 bits (116), Expect = 1e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || ||||| | || | || | ||| | ||||| ||| || || ||||| || || Sbjct 302 CCTCCTCTCAAGCGAAGAACGAGATGAAGAGTAGACTCCTTCTGAATGTTATAGTCTGAG 243 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | || || |||| || | || || || ||||| || | |||||||||||| ||||| Sbjct 242 AGGGTACGGCCATCCTCGAGCTGCTTTCCGGCAAAAATGAGTCTCTGTTGATCGGGTGGG 183 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || |||||||| |||||||| || |||||| || |||| ||||| |||||| Sbjct 182 ATGCCTTCTTTGTCTTGTATCTTGGCTTTTACGTTGTCGATAGTGTCTGAACTCTCTACT 123 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || || || || || ||||| || || || | || ||||||||| Sbjct 122 TCGAGGGTGATTGTCTTTCCAGTCAAAGTCTTGACGAAAATCTGCATT 75 >seq717 Length=13837 Score = 96.9 bits (106), Expect = 7e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || ||||| ||||| | || | || | || | |||||| ||| || || || Sbjct 161 ATTCCTCCTCTGAGACGAAGAACAAGGTGGAGGGTGGACTCTTTTTGGATGTTGTAGTCG 220 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| || || || || || || ||||| |||||||||||||| || Sbjct 221 GAGAGGGTGCGCCCATCCTCTAACTGCTTTCCGGCGAAGATCAATCTCTGTTGATCGGGA 280 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| || ||||| || || || || ||| || | || || || ||| Sbjct 281 GGGATTCCTTCCTTGTCTTGAATCTTGGCCTTGACGTTATCGATGGTGTCGGAGGACTCT 340 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||||| | |||||| || || || || | || || | || |||||||| || Sbjct 341 ACTTCCAAAGTAATAGTCTTTCCTGTGAGGGTCTTTACGAAAATCTGCATGTT 393 Score = 86.0 bits (94), Expect = 1e-11 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 192391 TGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATT 192450 || || || |||||||| | |||||||||||| || || |||||||| || ||||| || Sbjct 17 TGCTTTCCGGCAAAGATGAGTCTCTGTTGATCGGGGGGAATTCCTTCCTTGTCTTGAATC 76 Query 192451 TTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 192510 || ||| || || || | || || || || || || || ||||| || || ||| Sbjct 77 TTGGCTTTAACGTTGTCGATGGTGTCGGAGGACTCGACCTCCAGGGTAATCGTCTTTCCA 136 Query 192511 GTTAATGTTTTAATAAATATCTGCATT 192537 || || || || | |||||||||||| Sbjct 137 GTCAAAGTCTTGACGAATATCTGCATT 163 >seq2113 Length=21246 Score = 84.2 bits (92), Expect = 4e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || ||||| ||||| | || | || | ||| | ||| || |||||| || ||| Sbjct 21151 ATTCCTCCTCTGAGACGGAGGACGAGGTGAAGAGTGGACTCCTTCTGGATATTGTAGTCA 21092 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || ||| | || || | ||| || || || ||||| ||||| ||||||||||| Sbjct 21091 GAGAGAGTACGTCCGTCCTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGTTGATCAGGG 21032 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| || || ||||| || || |||||| || || | || || || Sbjct 21031 GGAATTCCCTCCTTGTCTTGGATCTTCGCTTTTACGTTGTCGATGGTGTCAGAGCTCTCG 20972 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || || || || || || || || | || || | || ||||||||| Sbjct 20971 ACCTCGAGGGTGATAGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCATT 20921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984447494623950