Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq593 136 7e-27 seq1024 118 2e-21 seq1344 114 2e-20 seq1378 105 1e-17 seq1044 98.7 2e-15 seq2313 96.9 6e-15 seq1564 93.3 8e-14 seq1239 89.7 9e-13 seq717 87.8 3e-12 >seq593 Length=28782 Score = 136 bits (150), Expect = 7e-27 Identities = 170/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||||||||| |||||||| ||||| | ||||| ||| || || || ||||| Sbjct 16105 ATTCCACCTCTAAGACGTAATACCAAATGGAGAGTAGACTCCTTCTGGATGTTGTAATCG 16164 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 |||| || |||| ||||| || || || || || || | ||||||||| || ||| Sbjct 16165 CTCAAAGTGCGGCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGTCTCTGTTGATCGGGT 16224 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| || ||||| || || ||||||||| || || ||||| || Sbjct 16225 GGGATTCCTTCCTTGTCTTGGATCTTGGCCTTTACATTATCGATTGTGTCTGAACTCTCC 16284 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||| || || || || || ||||||| ||| |||| ||| || ||||| || Sbjct 16285 ACTTCGAGTGTGATTGTCTTTCCAGTTAGTGTCTTAACGAAGATTTGCATGTT 16337 Score = 118 bits (130), Expect = 2e-21 Identities = 171/240 (71%), Gaps = 1/240 (0%) Strand=Plus/Plus Query 171830 TAGTTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAAT 171889 |||||| || | || |||||||| || | || | || | ||||| ||||| || Sbjct 15412 TAGTTTTATTGT-CCTCCTCTAAGACGCAGGACAAGGTGAAGAGTAGATTCTTTCTGGAT 15470 Query 171890 ATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTG 171949 || || || || | || || |||| || | || || || |||||||| | |||||| Sbjct 15471 GTTGTAGTCAGAAAGAGTTCTGCCGTCCTCAAGCTGCTTTCCGGCAAAAATGAGTCTCTG 15530 Query 171950 TTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATC 172009 |||||| || || |||||||| || ||||| || || || ||||| |||||||| Sbjct 15531 TTGGTCGGGAGGGATTCCTTCCTTGTCTTGAATCTTGGCCTTAACATTGTCGATAGTATC 15590 Query 172010 TGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||| ||||||||||||| || ||||| || || || | ||||| | || |||||||| Sbjct 15591 TGAGGATTCTACTTCTAAGGTGATGGTCTTGCCGGTGAGAGTTTTGACAAAAATCTGCAT 15650 >seq1024 Length=14032 Score = 118 bits (130), Expect = 2e-21 Identities = 166/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || |||||||| |||||||| || || | ||| | || || || ||||| || Sbjct 14010 ATTCCTCCTCTAAGACGTAATACCAAGTGGAGAGTCGATTCCTTCTGGATGTTATAGTCG 13951 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 |||| || |||| ||||| || || || || || || | |||||||||||| ||| Sbjct 13950 CTCAAAGTTCTGCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGTCTCTGTTGGTCGGGT 13891 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| ||||| ||||| || || ||| ||||| || |||||||| || || Sbjct 13890 GGGATTCCCTCTTTGTCTTGGATCTTGGCTTTGACATTGTCGATGGTATCTGAAGACTCG 13831 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || || || ||||| || || || || | ||| || | ||| || ||||| || Sbjct 13830 ACCTCAAGTGTAATTGTCTTTCCTGTGAGTGTCTTTACGAAGATTTGCATGTT 13778 >seq1344 Length=40060 Score = 114 bits (126), Expect = 2e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || ||||| || ||||| ||||| || | || | ||| || || ||||| || Sbjct 24207 ATTCCTCCTCTGAGACGTAAAACTAAGTGGAGCGTGGACTCCTTCTGGATGTTATAGTCA 24266 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || ||| |||| || | ||| || || || ||||| | |||||||||||| || Sbjct 24267 GAGAGAGTACGTCCGTCCTCGAGTTGCTTTCCGGCGAAAATGAGTCTCTGTTGGTCGGGG 24326 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| || || ||||| |||||| || || || || || ||||| |||||| Sbjct 24327 GGGATTCCCTCCTTGTCTTGAATTTTAGCCTTGACGTTGTCGATGGTGTCTGAAGATTCT 24386 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 ||||| || || || || || || || | ||| || | ||| || ||| Sbjct 24387 ACTTCGAGGGTGATTGTCTTTCCTGTAAGTGTCTTTACGAAGATTTGC 24434 Score = 105 bits (116), Expect = 1e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || ||||| || || | ||| || || | || | ||| || ||| || || ||| Sbjct 23979 ATTCCTCCTCTGAGACGAAGTACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCT 24038 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | ||| | || |||| ||| || || || || || | |||||||||||| || Sbjct 24039 GAGAGTGTGCGTCCATCCTCCAGTTGCTTTCCGGCGAAGATGAGTCTCTGTTGGTCGGGG 24098 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| |||||||| || || ||| ||||| ||||| ||||| ||||| Sbjct 24099 GGAATTCCTTCCTTATCTTGGATCTTGGCTTTAACATTGTCGATAGTGTCTGAAGATTCG 24158 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| | || || || || || || | ||||| | || || |||||| Sbjct 24159 ACTTCCAAGGTGATTGTCTTGCCGGTGAGAGTTTTGACAAAGATTTGCATT 24209 >seq1378 Length=10532 Score = 105 bits (116), Expect = 1e-17 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || ||||| | || ||||| | |||||| |||| ||| || ||| ||||| ||| Sbjct 10470 ATGCCTCCTCTTAATCTCAATACAAGATGTAATGTAGACTCCTTCTGAATGTTATAGTCT 10411 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | || || | || || || ||||| || | |||||||||||| || Sbjct 10410 GAGAGGGTACGGCCATCCTCGAGCTGCTTTCCGGCAAAGATGAGTCTCTGTTGGTCGGGG 10351 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| || ||||| || || || || ||| || || || || ||||| Sbjct 10350 GGAATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTATCGATGGTGTCAGATGATTCG 10291 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || |||| || ||||| || || || | || || | ||| |||||||| || Sbjct 10290 ACCTCTAAGGTGATGGTCTTTCCGGTGAGAGTCTTCACGAAGATCTGCATGTT 10238 >seq1044 Length=18651 Score = 98.7 bits (108), Expect = 2e-15 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 171909 CGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCT 171968 ||| | || |||| ||| || ||||| || || | |||||||||||| ||||| ||||| Sbjct 18529 CGTCCATCTTCCAGTTGCTTTCCAGCGAAGATGAGTCTCTGTTGGTCGGGTGGGATTCCC 18470 Query 171969 TCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGA 172028 || || |||||||| || |||||||||| || |||||||| || ||||| | Sbjct 18469 TCCTTGTCTTGTATCTTGGCTTTTACATTATCGATGGTATCTGAACTCTCGACTTCCAAT 18410 Query 172029 GTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || || || || || || | ||| || | ||| || ||||| || Sbjct 18409 GTGATTGTCTTGCCGGTGAGTGTCTTTACGAAGATTTGCATGTT 18366 >seq2313 Length=44285 Score = 96.9 bits (106), Expect = 6e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972 |||| || | || || || || || || | |||||||||||| ||||| || ||||| | Sbjct 27801 CGTCCTCTAGCTGCTTTCCGGCGAAGATGAGTCTCTGTTGGTCTGGTGGAATGCCTTCCT 27742 Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032 | ||||| || ||| || || || ||| |||||||| ||||| ||||| || || | Sbjct 27741 TGTCTTGGATCTTAGCCTTGACGTTGTCTATTGTATCTGAAGATTCAACTTCGAGGGTGA 27682 Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 | || || ||||| | || || | ||| ||||||||| Sbjct 27681 TTGTCTTTCCAGTGAGGGTCTTTACGAAGATCTGCATT 27644 Score = 91.5 bits (100), Expect = 3e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || |||| || || ||||| || || | |||||||||||| || |||||||| || ||| Sbjct 27571 TCCTCCAGCTGCTTTCCAGCGAAGATGAGTCTCTGTTGGTCTGGGGGTATTCCCTCCTTA 27512 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| || || |||||||| || || ||||| || ||||| | ||| ||| Sbjct 27511 TCTTGGATCTTGGCCTTTACATTGTCGATGGTGTCTGAGCTCTCGACTTCCAAAGTGATG 27452 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || || || ||||| || || | || |||||||| || Sbjct 27451 GTCTTTCCGGTTAAAGTCTTTACAAAAATCTGCATGTT 27414 >seq1564 Length=26684 Score = 93.3 bits (102), Expect = 8e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || ||||| || || | || || || | || | ||| || ||| || || || Sbjct 11827 ATTCCTCCTCTCAGACGAAGGACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCA 11768 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || |||| || | || || || |||||||| | |||||||||||| || Sbjct 11767 GAGAGAGTGCGGCCGTCCTCAAGCTGCTTTCCGGCAAAAATAAGTCTCTGTTGGTCGGGG 11708 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| || || ||||| || || |||||| || || ||||| || || Sbjct 11707 GGGATTCCCTCCTTGTCTTGGATCTTGGCTTTTACGTTGTCGATGGTATCAGAGCTCTCG 11648 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || || || ||||| || ||||| || || || | ||| ||||||||| Sbjct 11647 ACCTCGAGGGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCATT 11597 >seq1239 Length=29077 Score = 89.7 bits (98), Expect = 9e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||| |||| | || || || || || | ||||| ||| || ||| || |||||||| Sbjct 23115 ACCTCCTCGTAATCTCAACACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCTGA 23174 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | || || | || ||||| || || |||||||| || | |||||||||||| || || Sbjct 23175 GAGAGTGCGGCCATCTTCCAACTGCTTTCCAGCAAAGATGAGTCTCTGTTGGTCGGGAGG 23234 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || ||||| || ||||| || || || || || || || ||||| || || Sbjct 23235 GATACCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCTGAGCTCTCCAC 23294 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || | ||| ||||| || || || | || || | || ||||||||| Sbjct 23295 CTCCAAAGTGATGGTCTTTCCGGTCAGGGTCTTGACAAAGATCTGCATT 23343 >seq717 Length=13837 Score = 87.8 bits (96), Expect = 3e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972 |||| || | || || || ||||| || | ||||||||| || || || |||||||| | Sbjct 6 CGTCCTCAAGCTGCTTTCCGGCAAAGATGAGTCTCTGTTGATCGGGGGGAATTCCTTCCT 65 Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032 | ||||| || || ||| || || || || || || || || || || || |||| Sbjct 66 TGTCTTGAATCTTGGCTTTAACGTTGTCGATGGTGTCGGAGGACTCGACCTCCAGGGTAA 125 Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 | || || ||||| || || || | ||||||||||||| Sbjct 126 TCGTCTTTCCAGTCAAAGTCTTGACGAATATCTGCATT 163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905106843306600