Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1706 161 1e-33 seq455 143 3e-28 seq1441 141 1e-27 seq1881 102 1e-15 seq1686 91.5 2e-12 seq2150 89.7 6e-12 seq1021 89.7 6e-12 seq1019 89.7 6e-12 seq553 89.7 6e-12 seq2557 87.8 2e-11 seq1054 87.8 2e-11 seq41 87.8 2e-11 >seq1706 Length=44628 Score = 161 bits (178), Expect = 1e-33 Identities = 150/188 (80%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 1592114 ACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCACCCTCTTT 1592173 || ||| |||| | || |||||| ||||||||| | ||||| || |||| ||||| Sbjct 5744 ACAGACAACATTACTCCTTGGGACGCCGAGTTTTGCAAGGTCGACCAAGCCACACTCTTC 5803 Query 1592174 GAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG-GGTGCAA 1592232 ||| | || | ||||||||||| ||||||||||||||||| || || |||| || || Sbjct 5804 GAGCTCATTTTGGCCGCCAACTATCTCGACATCAAGCCTCTTCTGGA-CTTGACATGTAA 5862 Query 1592233 GTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACAT 1592292 | |||| ||||||||||||||||| ||| | |||||||||||| | |||||||| ||||| Sbjct 5863 GACTGTTGCCAACATGATCAAGGGAAAGACACCCGAGGAGATCAGAAAGACCTTCAACAT 5922 Query 1592293 CAAGTACG 1592300 |||| ||| Sbjct 5923 CAAGAACG 5930 >seq455 Length=31299 Score = 143 bits (158), Expect = 3e-28 Identities = 222/314 (71%), Gaps = 6/314 (2%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 |||||||||||||| || | ||||| || ||||||||||| || | || ||||| Sbjct 8274 GCCTTGGCGTACTCTGAGACTCTACGCTCAAAGAAGTTGGTCTTTCCTTGCAGAGAGATG 8333 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 | ||||||| || ||||| | | | ||||||| ||| ||| | || Sbjct 8334 AGGACCATCCAATCAAAGGGGTTCTCGGCATGGAAGTGCTTGGGGCACTTGAGGGCGACG 8393 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 ||||| | ||||||||||||||||| ||||| ||| ||| ||||||||| || || Sbjct 8394 AGCAGTCTATCGGCGACAAACTCGATATACTGTGTCATCAGGTTGGCGTTCATTCCAATC 8453 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || | || |||| | |||| | |||||||| |||||| ||| ||||| || | |||| Sbjct 8454 AGACCAACTGGCAAAGCCTCGGTGACAAACTCCTTCTCGCACTCCACGGCGTCAAGGATG 8513 Query 868931 ATCTGCCT---GGGCACGTCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAG 868987 |||| | | || | | | ||| | | | ||| ||||| || ||||||||||| Sbjct 8514 ATCTTCTTCACGGTCTCTT-GGCTGGGTTTCTCTTGT--AGCATGTTGAAGAGCAGGCAG 8570 Query 868988 GCAAAGTCGCAGTG 869001 |||||||||||||| Sbjct 8571 GCAAAGTCGCAGTG 8584 Score = 107 bits (118), Expect = 2e-17 Identities = 194/284 (68%), Gaps = 6/284 (2%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 |||||||||||| || | |||||| || || || |||||||| || | |||| Sbjct 8589 CCTTCGTCGCGAGAAATAAATTCGTTTGATGTGGAAAGACCTGGCATGAGACCTCTCTTC 8648 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 || | ||||||||||| ||||| || ||||| ||||||||||| ||||| || || Sbjct 8649 TTCAACCAAAAGATGGAACAGAAGGAACCAGAGAAGAAGATGCCCTCTACGGCAGCGAAA 8708 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAG 869359 ||| ||| || || | || | |||| | |||||||| | |||||| Sbjct 8709 GCGACGAGGCGTTCTCCGAAAGAGTCG------GAATCATTGATCCAGCGAAGAGCCCAG 8762 Query 869360 TCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCG 869419 || ||||| || | | | || | ||||||||| | ||||| |||| ||| Sbjct 8763 TCCGCCTTCTTTTTGATGCAGGGGATGTGGTCGATGGCATGGAAGAGCATTGCCTTCTCG 8822 Query 869420 GCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 | |||||||||| || ||||| |||| ||| ||||| ||||| Sbjct 8823 GTGGGGTCCTTGATGTACGTGTCTATCAAGAGAGAATAAGTCTC 8866 >seq1441 Length=33442 Score = 141 bits (156), Expect = 1e-27 Identities = 197/276 (71%), Gaps = 0/276 (0%) Strand=Plus/Minus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 |||||||| || || || ||||| || ||||| | |||||||| ||||| || || || Sbjct 1934 TGGTCGACATAACGTGCAGTGTCATTGAAGACTCTAAGCATGGGGACGAGTCCATTAGAG 1875 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 | || || || || | ||| | | || || | | |||||| || | | ||| Sbjct 1874 GCACCATTTGTTCCTCTGATGTAACTGTCTGCAGCTCTGATCTTGTGGGCAGACAGACCG 1815 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 ||||| ||||| || || |||||||| |||||||| || || ||||||||||| |||||| Sbjct 1814 ATGCCTCCGGCAGATTTAGAGATGAGAGCGCACTGCTTTAGAGTGTCGTAGATACCCTCG 1755 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 || || || |||||||||||| || ||||| || || | || || | ||||| Sbjct 1754 ATAGAATCCTCCTTCATGTCCAAAAGGAAGCAGGAAGACATCTGAGGTCTTGGTGTGCCA 1695 Query 1630306 GCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAAC 1630341 | |||||| || ||||| || || ||||| ||| Sbjct 1694 GAGTTGAAAAGTGTGGGTGTGGCGTGTGTGAAAAAC 1659 Score = 91.5 bits (100), Expect = 2e-12 Identities = 105/140 (75%), Gaps = 1/140 (1%) Strand=Plus/Minus Query 1628462 ACGT-CCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTT 1628520 |||| ||| || |||||||||||||| || || | |||| || || ||||| |||||| Sbjct 2075 ACGTACCAGAGGGCGTAAAAGAGGTCACGTGCTCTCCTCTCTTCTTTTCCGTGATTCTTT 2016 Query 1628521 TTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCG 1628580 |||| || | | ||| |||||||| ||||| |||||||| || ||||||||| Sbjct 2015 CTGAGATCCAAAAACTCGGTGATGTCGGCATGCCATGGCTCCAGATAAACGGCAAAGGCA 1956 Query 1628581 CCCTTGCGCTTGCCGCCGCC 1628600 ||||| | ||| || || || Sbjct 1955 CCCTTCCTCTTACCACCTCC 1936 Score = 86.0 bits (94), Expect = 8e-11 Identities = 125/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 1628100 GACAAACTTGGGCAGGGCCACGCTGGAAAGGTTGCAAGTCGCCACTTCCGTGGGCGACGA 1628159 |||||||||||||||||| | | | || ||||| ||| || || ||| | Sbjct 2483 GACAAACTTGGGCAGGGCGATGGATGCCAGATTGCACACCGCAACCTCATCCTGCGCAGT 2424 Query 1628160 AAACTGGACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTT 1628219 ||| | ||||||||||||| |||| ||| | | || || |||||||| ||||| Sbjct 2423 GTACTCCATAATCTCGGTGCACAAGTTGCTAGACTTGATGGTTCCGAGGTTCTGTTGGTT 2364 Query 1628220 GGTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTG 1628276 | | | |||| |||||||||||| |||||| || || | |||||||| ||||| Sbjct 2363 GCTCTTTCTGTTGGCGGCGTCCTTGTAGAGCATATAAGGTGTTCCGGTCTCAATCTG 2307 >seq1881 Length=25171 Score = 102 bits (112), Expect = 1e-15 Identities = 175/254 (69%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 868755 CCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCA 868814 ||||||| ||| |||||| |||| ||| ||||||| | || || || | || | Sbjct 18274 CCATCCAATCGAAAGGGTTGAGCGTGTTGAAGTGCTTGGGGTTGCCAAGGGATACCAGAA 18215 Query 868815 GGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCG 868874 | || || |||||||| ||||||||||| |||| || | || ||||| |||||||| Sbjct 18214 GACGATCCGCGACAAATTCGATGTACTGAGACATCAGATCTGCATTCATCCCGATGAGGC 18155 Query 868875 CCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGATCT 868934 | || || | | || | |||||||| ||||| |||||||| || | ||||||| Sbjct 18154 CGACGGGTAAGGCGTCTGTGACAAACTCCTTCTCACAATCGACGGCGTCCAAGATGATCA 18095 Query 868935 GCCTGGGCACGTCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAGGCAAAGT 868994 | | || || || |||||||| ||||| || | | ||||| || |||| Sbjct 18094 TCTTTACGACTTCTTGTGATGGCTTGTTTCTTAGCATGCTGAATAAGAGGCAAGCGAAGT 18035 Query 868995 CGCAGTGCAACCCT 869008 |||| || | |||| Sbjct 18034 CGCAATGTAGCCCT 18021 >seq1686 Length=2970 Score = 91.5 bits (100), Expect = 2e-12 Identities = 79/98 (81%), Gaps = 4/98 (4%) Strand=Plus/Plus Query 60581 TGGCACCGTAGTTAAGTGGTAAAATTCCTGCTTCGGGTGCAGGAGGCCCCGGTTCGATTC 60640 |||| || ||||| || |||||||||||||||| ||||||||||||||| ||||||| || Sbjct 240 TGGCTCCATAGTTTAGAGGTAAAATTCCTGCTTTGGGTGCAGGAGGCCCGGGTTCGAGTC 299 Query 60641 CGGGCGGCGCCCACCACTCtttttttGCTaaaaaaaTA 60678 | || || |||||| ||||| | ||| |||| || Sbjct 300 CCGGTGGAGCCCAC----ATTTTTCTTCTACAAAATTA 333 >seq2150 Length=30306 Score = 89.7 bits (98), Expect = 6e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60582 GGCACCGTAGTTAAGTGGTAAAATTCCTGCTTCGGGTGCAGGAGGCCCCGGTTCGATTCC 60641 ||| || ||||| || |||||||||||||||||||||||||||||||| ||||||| ||| Sbjct 8759 GGCTCCATAGTTTAGAGGTAAAATTCCTGCTTCGGGTGCAGGAGGCCCGGGTTCGAGTCC 8818 Query 60642 GGGCGGCGCCCA 60653 || || ||||| Sbjct 8819 CGGTGGAGCCCA 8830 >seq1021 Length=17123 Score = 89.7 bits (98), Expect = 6e-12 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60581 TGGCACCGTAGTTAAGTGGTAAAATTCCTGCTTCGGGTGCAGGAGGCCCCGGTTCGATTC 60640 |||| || ||||| || |||||||||||||||| ||||||||||||||| ||||||| || Sbjct 531 TGGCTCCATAGTTTAGAGGTAAAATTCCTGCTTTGGGTGCAGGAGGCCCGGGTTCGAGTC 590 Query 60641 CGGGCGGCGCCCAC 60654 | || || |||||| Sbjct 591 CCGGTGGAGCCCAC 604 >seq1019 Length=3549 Score = 89.7 bits (98), Expect = 6e-12 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60581 TGGCACCGTAGTTAAGTGGTAAAATTCCTGCTTCGGGTGCAGGAGGCCCCGGTTCGATTC 60640 |||| || ||||| || |||||||||||||||| ||||||||||||||| ||||||| || Sbjct 1582 TGGCTCCATAGTTTAGAGGTAAAATTCCTGCTTTGGGTGCAGGAGGCCCGGGTTCGAGTC 1523 Query 60641 CGGGCGGCGCCCAC 60654 | || || |||||| Sbjct 1522 CCGGTGGAGCCCAC 1509 >seq553 Length=21094 Score = 89.7 bits (98), Expect = 6e-12 Identities = 71/85 (84%), Gaps = 3/85 (4%) Strand=Plus/Minus Query 60582 GGCACCGTAGTTAAGTGGTAAAATTCCTGCTTCGGGTGCAGGAGGCCCCGGTTCGATTCC 60641 ||| || ||||| || |||||||||||||||| ||||||||||||||| ||||||| ||| Sbjct 13641 GGCTCCATAGTTTAGAGGTAAAATTCCTGCTTTGGGTGCAGGAGGCCCGGGTTCGAGTCC 13582 Query 60642 GGGCGGCGCCCACCACTCttttttt 60666 || || || |||||||||| || Sbjct 13581 CGGTGGAGC---CCACTCTTTTGTT 13560 >seq2557 Length=65872 Score = 87.8 bits (96), Expect = 2e-11 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60582 GGCACCGTAGTTAAGTGGTAAAATTCCTGCTTCGGGTGCAGGAGGCCCCGGTTCGATTCC 60641 ||| || ||||| || |||||||||||||||| ||||||||||||||| ||||||| ||| Sbjct 54195 GGCTCCATAGTTTAGAGGTAAAATTCCTGCTTTGGGTGCAGGAGGCCCGGGTTCGAGTCC 54136 Query 60642 GGGCGGCGCCCAC 60654 || || |||||| Sbjct 54135 CGGTGGAGCCCAC 54123 >seq1054 Length=103491 Score = 87.8 bits (96), Expect = 2e-11 Identities = 69/82 (84%), Gaps = 3/82 (4%) Strand=Plus/Minus Query 60582 GGCACCGTAGTTAAGTGGTAAAATTCCTGCTTCGGGTGCAGGAGGCCCCGGTTCGATTCC 60641 ||| || ||||| || |||||||||||||||| ||||||||||||||| ||||||| ||| Sbjct 467 GGCTCCATAGTTTAGAGGTAAAATTCCTGCTTTGGGTGCAGGAGGCCCGGGTTCGAGTCC 408 Query 60642 GGGCGGCGCCCACCACTCtttt 60663 || || || |||||||||| Sbjct 407 CGGTGGAGC---CCACTCTTTT 389 Score = 87.8 bits (96), Expect = 2e-11 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60582 GGCACCGTAGTTAAGTGGTAAAATTCCTGCTTCGGGTGCAGGAGGCCCCGGTTCGATTCC 60641 ||| || ||||| || |||||||||||||||| ||||||||||||||| ||||||| ||| Sbjct 7190 GGCTCCATAGTTTAGAGGTAAAATTCCTGCTTTGGGTGCAGGAGGCCCGGGTTCGAGTCC 7131 Query 60642 GGGCGGCGCCCAC 60654 || || |||||| Sbjct 7130 CGGTGGAGCCCAC 7118 >seq41 Length=61788 Score = 87.8 bits (96), Expect = 2e-11 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60582 GGCACCGTAGTTAAGTGGTAAAATTCCTGCTTCGGGTGCAGGAGGCCCCGGTTCGATTCC 60641 ||| || ||||| || |||||||||||||||| ||||||||||||||| ||||||| ||| Sbjct 17270 GGCTCCATAGTTTAGAGGTAAAATTCCTGCTTTGGGTGCAGGAGGCCCGGGTTCGAGTCC 17211 Query 60642 GGGCGGCGCCCAC 60654 || || |||||| Sbjct 17210 CGGTGGAGCCCAC 17198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106927719311909