Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq593 111 1e-19 seq343 100 2e-16 seq1564 93.3 3e-14 seq1344 91.5 1e-13 seq1239 86.0 5e-12 >seq593 Length=28782 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAG-CCTGA 110331 ||||| || |||||||||||| | |||||||| ||||| ||| | ||| || ||| | Sbjct 15650 ATGCAGATTTTTGTCAAAACTCTCACCGGCAAGACCATCACCTTAGAAGTAGAATCCTCA 15591 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 |||||| ||| | | || || |||||| ||||| ||||| | || || || Sbjct 15590 -GATACTATCGACAATGTTAAGGCCAAGATTCAAGACAAGGAAGGAATCCCTCCCGACCA 15532 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| ||||| |||| ||| || || ||||| ||||| | |||||| | | || ||||| Sbjct 15531 ACAGAGACTCATTTTTGCCGGAAAGCAGCTTGAGGACGGCAGAACTCTTTCTGACTACAA 15472 Query 110452 CATTCAAAAAGAATCTAC 110469 ||| || ||||||||||| Sbjct 15471 CATCCAGAAAGAATCTAC 15454 >seq343 Length=26413 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || || ||||| ||||| || || || || || ||| ||||| ||| | Sbjct 75 AATGCAGATTTTCGTCAAGACTTTGACTGGAAAGACAATCACCCTCGAAGTAGAGAGTTC 134 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || ||| ||| | | |||||| ||||| |||||||||||| | || ||||| Sbjct 135 AGACACTATCGACAACGTAAAAGCCAAGATACAAGACAAAGAAGGCATCCCACCCGATCA 194 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| ||||| |||| ||| || || ||||| ||||||| | | || | | || || || Sbjct 195 ACAGAGACTCATTTTTGCCGGAAAGCAGCTCGAGGATGGCCGTACCCTCTCAGACTATAA 254 Query 110452 CATTCAAAAAGAATCTAC 110469 |||||| || || ||||| Sbjct 255 CATTCAGAAGGAGTCTAC 272 >seq1564 Length=26684 Score = 93.3 bits (102), Expect = 3e-14 Identities = 163/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CG-GAGC-C 110328 |||||| || || ||||| ||||| || || || ||||| ||| |||| || |||| | Sbjct 11597 AATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACCATCACCCTCGAGGTCGAGAGCTC 11656 Query 110329 TGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGA 110388 ||| ||| ||| | | |||||| ||||| ||||| || || | ||| || Sbjct 11657 TGA---TACCATCGACAACGTAAAAGCCAAGATCCAAGACAAGGAGGGAATCCCCCCCGA 11713 Query 110389 TCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTA 110448 ||||| |||||||||| ||| || || ||||| ||||| | | | || | | || || Sbjct 11714 CCAACAGAGACTTATTTTTGCCGGAAAGCAGCTTGAGGACGGCCGCACTCTCTCTGACTA 11773 Query 110449 CAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||||||| || || || || | ||| |||| | | ||| |||| |||| Sbjct 11774 CAACATTCAGAAGGAGTCCACCCTCCACTTGGTCCTTCGTCTGAGAGGAGGAA 11826 >seq1344 Length=40060 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| |||||||||||| | |||||||| || || ||| | ||| || || Sbjct 24209 AATGCAAATCTTTGTCAAAACTCTCACCGGCAAGACAATCACCTTGGAAGTCGAATCTTC 24150 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || ||| ||| | | || ||| ||||| || || ||||| | ||| || || Sbjct 24149 AGACACTATCGACAATGTTAAAGCCAAGATCCAAGATAAGGAAGGAATTCCCCCCGACCA 24090 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| ||||| || | || || || || |||||||||| | ||| | | || ||||| Sbjct 24089 ACAGAGACTCATCTTCGCCGGAAAGCAACTGGAGGATGGACGCACACTCTCAGACTACAA 24030 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGT 110481 |||||| || || || || | ||| |||| Sbjct 24029 CATTCAGAAGGAGTCCACCCTTCACTTGGT 24000 >seq1239 Length=29077 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTG 110330 |||||| || |||||||| || | ||||| || ||||| || | || |||| || Sbjct 23343 AATGCAGATCTTTGTCAAGACCCTGACCGGAAAGACCATCACTTTGGAGGTGGAGAGCTC 23284 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 | || || ||| | | || || ||||| ||||| ||||| | || || | Sbjct 23283 A-GACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCCGACC 23225 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 |||| ||||| || | ||| || || ||| |||| |||| | | || | | ||||||| Sbjct 23224 AACAGAGACTCATCTTTGCTGGAAAGCAGTTGGAAGATGGCCGCACTCTCTCAGATTACA 23165 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||||| || || ||||| | ||| ||||||| ||| | ||||| || Sbjct 23164 ACATTCAGAAGGAGTCTACTCTTCACTTGGTGTTGAGATTACGAGGAGG 23116 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-C 110328 || ||||| || ||||| ||||| || ||||| || ||||| || | || |||| | Sbjct 23573 AACATGCAGATCTTTGTAAAAACATTGACCGGAAAGACCATCACTTTGGAGGTGGAGAGC 23514 Query 110329 TGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGA 110388 | | || || ||| | | || || |||||| ||||| || ||| | || || Sbjct 23513 TCA-GACACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGA 23455 Query 110389 TCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTA 110448 ||||||||||| |||| || || || || || ||||| | ||| || | | || || Sbjct 23454 CCAACAAAGACTCATTTTCGCCGGAAAGCAACTCGAGGACGGCAGGACCCTCTCAGACTA 23395 Query 110449 CAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||| || || ||||| || || | ||| | ||||| ||| || |||| |||| Sbjct 23394 CAATATCCAGAAAGAGTCCACCCTTCACCTCGTGTTGAGATTGAGAGGAGGAA 23342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412828633806461