Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq343 105 5e-18 seq593 100 2e-16 seq1564 98.7 8e-16 seq1344 95.1 1e-14 seq2113 82.4 6e-11 seq1766 82.4 6e-11 seq1239 82.4 6e-11 >seq343 Length=26413 Score = 105 bits (116), Expect = 5e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| ||||| ||||| ||||| || || || || || ||| ||||| ||| | Sbjct 75 AATGCAGATTTTCGTCAAGACTTTGACTGGAAAGACAATCACCCTCGAAGTAGAGAGTTC 134 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || ||| ||| | | |||||| ||||| || ||||||||| | || ||||| Sbjct 135 AGACACTATCGACAACGTAAAAGCCAAGATACAAGACAAAGAAGGCATCCCACCCGATCA 194 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||||| |||| ||| || || ||||| ||||| | | || | | ||||| || Sbjct 195 ACAGAGACTCATTTTTGCCGGAAAGCAGCTCGAGGATGGCCGTACCCTCTCAGACTATAA 254 Query 107735 CATTCAAAAGGAGTCTAC 107752 |||||| ||||||||||| Sbjct 255 CATTCAGAAGGAGTCTAC 272 >seq593 Length=28782 Score = 100 bits (110), Expect = 2e-16 Identities = 168/242 (69%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||||||||||||| | || ||||| ||||| ||| | ||| || | Sbjct 15650 ATGCAGATTTTTGTCAAAACTCTCACCGGCAAGACCATCACCTTAGAAGTAGAATCCTCA 15591 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| ||| | | || || |||||| || || ||||| | || || || Sbjct 15590 GATACTATCGACAATGTTAAGGCCAAGATTCAAGACAAGGAAGGAATCCCTCCCGACCAA 15531 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||||| |||| ||| || || ||||| ||||||| || ||| | | ||||||||| Sbjct 15530 CAGAGACTCATTTTTGCCGGAAAGCAGCTTGAGGACGGCAGAACTCTTTCTGACTACAAC 15471 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAATAAAAAT 107795 || || || || ||||| | ||| | || || | | |||| || | ||||||| | Sbjct 15470 ATCCAGAAAGAATCTACTCTTCACCTTGTCCTGCGTCTTAGAGGAGG--ACAATAAAACT 15413 Query 107796 AT 107797 || Sbjct 15412 AT 15411 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||||||||| ||||||||| | || ||||| || |||||| | ||| ||| || Sbjct 16107 AATGCAAATTTTCGTCAAAACTCTCACTGGCAAGACAATTACCTTAGAAGTCGAGTCTTC 16048 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| ||| | | || ||| ||||| || ||||| || | || ||||| Sbjct 16047 AGATACCATCGACAATGTCAAAGCCAAGATCCAAGACAAAGAGGGAATCCCACCCGATCA 15988 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||||||| |||| || || || || | ||||||| || ||| | |||||||| Sbjct 15987 GCAGAGACTCATTTTCGCCGGAAAGCAATTAGAGGACGGCAGAACTTTAAGCGACTACAA 15928 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| || ||||| || || Sbjct 15927 CATCCAGAAGGAATCGAC 15910 >seq1564 Length=26684 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 |||||| || || ||||| ||||| || || || ||||| ||| |||| ||| ||| Sbjct 11597 AATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACCATCACCCTCGAGGTCGAGAGCTC 11656 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 ||||| ||| | | |||||| ||||| || || || || | ||| || | Sbjct 11657 T-GATACCATCGACAACGTAAAAGCCAAGATCCAAGACAAGGAGGGAATCCCCCCCGACC 11715 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 | ||||||||||||| ||| || || ||||| ||||||| | || | | ||||||| Sbjct 11716 AACAGAGACTTATTTTTGCCGGAAAGCAGCTTGAGGACGGCCGCACTCTCTCTGACTACA 11775 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||||| |||||||| || | ||| |||| Sbjct 11776 ACATTCAGAAGGAGTCCACCCTCCACTTGGT 11806 >seq1344 Length=40060 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 ||||||||| |||||||||||| | || ||||| || || ||| | ||| || || Sbjct 24209 AATGCAAATCTTTGTCAAAACTCTCACCGGCAAGACAATCACCTTGGAAGTCGAATCTTC 24150 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || ||| ||| | | || ||| ||||| ||||| ||||| | ||| || || Sbjct 24149 AGACACTATCGACAATGTTAAAGCCAAGATCCAAGATAAGGAAGGAATTCCCCCCGACCA 24090 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||||| || | || || || || |||||||| | ||| | | |||||||| Sbjct 24089 ACAGAGACTCATCTTCGCCGGAAAGCAACTGGAGGATGGACGCACACTCTCAGACTACAA 24030 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 |||||| |||||||| || | ||| |||| Sbjct 24029 CATTCAGAAGGAGTCCACCCTTCACTTGGT 24000 >seq2113 Length=21246 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||||||||| || || ||||| || || || ||||| ||| |||| ||| | Sbjct 20693 AATGCAAATTTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTCGAGGTCGAGTCCTC 20752 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | | || || |||||| ||||| || || | ||| || || Sbjct 20753 CGACACCATCGACAATGTGAAGGCCAAGATTCAAGATAAGGAGGGAATCCCCCCCGACCA 20812 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||||| |||| || || || ||||| ||||||| | ||| | |||||||| Sbjct 20813 ACAGAGACTCATTTTCGCCGGAAAGCAGCTTGAGGACGGTAGAACTCTCAGCGACTACAA 20872 Query 107735 CATTCAAAAGGAGTCTAC 107752 || || |||||||| || Sbjct 20873 TATCCAGAAGGAGTCCAC 20890 >seq1766 Length=5059 Score = 82.4 bits (90), Expect = 6e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||| || ||||| || | || || || || || || ||||| ||| ||| Sbjct 4709 AATGCAAATCTTCGTCAAGACCCTCACTGGAAAGACAATCACACTCGAAGTAGAGAGCTC 4650 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 || || ||| | | |||||| ||||| || || ||||| | ||| |||| Sbjct 4649 A-GACACCATCGACAATGTAAAAGCCAAGATCCAAGACAAGGAAGGAATTCCCCCTGATC 4591 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 | |||||||| |||| ||| || || || | ||||||| | ||| | | ||||| | Sbjct 4590 AACAGAGACTCATTTTTGCCGGAAAGCAATTAGAGGACGGCCGAACCCTCTCAGACTATA 4531 Query 107734 ACATTCAAAAGGAGTCTAC 107752 ||||||| ||||||||||| Sbjct 4530 ACATTCAGAAGGAGTCTAC 4512 >seq1239 Length=29077 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 |||||| || |||||||| || | || || || ||||| || | || |||| ||| Sbjct 23343 AATGCAGATCTTTGTCAAGACCCTGACCGGAAAGACCATCACTTTGGAGGTGGAGAGCTC 23284 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 || || ||| | | || || ||||| || || ||||| | || || | Sbjct 23283 A-GACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCCGACC 23225 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 | |||||||| || | ||| || || ||| |||| || | | || | | || |||| Sbjct 23224 AACAGAGACTCATCTTTGCTGGAAAGCAGTTGGAAGATGGCCGCACTCTCTCAGATTACA 23165 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||||| ||||||||||| | ||| ||||||||||||| ||||| || Sbjct 23164 ACATTCAGAAGGAGTCTACTCTTCACTTGGTGTTGAGATTACGAGGAGG 23116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398864272401553