Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq593 132 8e-26 seq343 125 1e-23 seq1766 114 2e-20 seq1344 95.1 2e-14 seq1825 89.7 8e-13 >seq593 Length=28782 Score = 132 bits (146), Expect = 8e-26 Identities = 165/226 (73%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| | || || || |||||||| | || || || | | Sbjct 16105 TGCAAATTTTCGTCAAAACTCTCACTGGCAAGACAATTACCTTAGAAGTCGAGTCTTCAG 16046 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | ||||| ||| || || ||| ||||| || || ||||||||||| | Sbjct 16045 ATACCATCGACAATGTCAAAGCCAAGATCCAAGACAAAGAGGGAATCCCACCCGATCAGC 15986 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||||||||||| || || || |||||||| || ||||| |||| || || || | Sbjct 15985 AGAGACTCATTTTCGCCGGAAAGCAATTAGAGGACGGCAGAACTTTAAGCGACTACAACA 15926 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || || ||||||||| |||||||||| ||||| | |||||||| Sbjct 15925 TCCAGAAGGAATCGACTCTCCATTTAGTCTTACGTCTCAGAGGAGG 15880 Score = 102 bits (112), Expect = 1e-16 Identities = 158/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || ||| |||| ||||| ||||| || | || || || | | Sbjct 16333 TGCAAATCTTCGTTAAGACACTAACTGGAAAGACAATCACACTCGAAGTGGAGAGTTCAG 16274 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | |||||||| || || ||| || ||||| || ||||||||||||| Sbjct 16273 ACACAATCGATAATGTAAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCCGATCAAC 16214 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | |||||||| || || || || || || || || | || || | ||||| || | Sbjct 16213 AGAGACTCATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGCACTTTGAGCGATTACAACA 16154 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || || || || ||| ||||||| |||||||| | ||||| || Sbjct 16153 TCCAGAAGGAGTCTACTCTCCATTTGGTATTACGTCTTAGAGGTGG 16108 Score = 89.7 bits (98), Expect = 8e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 146136 ATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACG 146195 || |||||||||||||| ||||||||||| || || || |||||||| ||| | || Sbjct 28782 ATCCCACCCGATCAACAGAGACTCATTTTCGCCGGAAAGCAATTAGAGGATGGACGCACA 28723 Query 146196 TTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGA 146255 | | || || ||||| ||||| || || ||| |||| ||||| ||||| | |||||| Sbjct 28722 CTTAGCGACTACAATATTCAAAAGGAGTCTACTCTCCACTTAGTTTTACGTCTCAGAGGA 28663 Query 146256 GG 146257 || Sbjct 28662 GG 28661 >seq343 Length=26413 Score = 125 bits (138), Expect = 1e-23 Identities = 174/244 (71%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | || || || || ||||| ||||| || | || ||||| | | Sbjct 77 TGCAGATTTTCGTCAAGACTTTGACTGGAAAGACAATCACCCTCGAAGTAGAGAGTTCAG 136 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | ||||| | || |||||| || |||||| ||||||||||| ||||||||||||| Sbjct 137 ACACTATCGACAACGTAAAAGCCAAGATACAAGACAAAGAAGGCATCCCACCCGATCAAC 196 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | |||||||||||||| || || || | || ||| | || | |||| ||||| | Sbjct 197 AGAGACTCATTTTTGCCGGAAAGCAGCTCGAGGATGGCCGTACCCTCTCAGACTATAACA 256 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATATTGA 146271 | || || || || ||| | ||| | || | || || |||||||| ||||||| |||| Sbjct 257 TTCAGAAGGAGTCTACTCTTCATCTCGTTCTTCGCTTGAGAGGAGGACAATAAATTTTGA 316 Query 146272 AAAT 146275 | || Sbjct 317 ACAT 320 >seq1766 Length=5059 Score = 114 bits (126), Expect = 2e-20 Identities = 163/227 (72%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGA-ACATAAC 146090 |||| || ||| | || || || || ||||| ||||| || | || || || | | | Sbjct 4935 TGCAGATTTTCGTTAAGACTTTGACTGGAAAGACAATCACCCTCGAAGTGGAGAGCTCA- 4877 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || || | ||||||||| || |||||| || || || || |||||||||||| Sbjct 4876 GACACCATCGACAATGTAAAAGCCAAGATACAAGACAAGGAGGGAATCCCACCCGATCAA 4817 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || ||||||||||| || || || |||||||| ||| | || | | || || ||| Sbjct 4816 CAGAGACTCATTTTCGCCGGAAAGCAATTAGAGGATGGACGCACACTTAGCGACTACAAT 4757 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 || ||||| || || ||| |||| ||||| ||||| | |||||||| Sbjct 4756 ATTCAAAAGGAGTCTACTCTCCACTTAGTTTTACGTCTCAGAGGAGG 4710 Score = 113 bits (124), Expect = 7e-20 Identities = 168/236 (71%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGA-ACATAAC 146090 ||||||| ||| | || || | || ||||| ||||| || | || ||||| | | | Sbjct 4707 TGCAAATCTTCGTCAAGACCCTCACTGGAAAGACAATCACACTCGAAGTAGAGAGCTCA- 4649 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || || | ||||||||| || || ||| || ||||| ||||| || |||||| Sbjct 4648 GACACCATCGACAATGTAAAAGCCAAGATCCAAGACAAGGAAGGAATTCCCCCTGATCAA 4589 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || |||||||||||||| || || |||||||| || |||| | |||| ||||| Sbjct 4588 CAGAGACTCATTTTTGCCGGAAAGCAATTAGAGGACGGCCGAACCCTCTCAGACTATAAC 4529 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAAT 146266 || || || || || ||| | ||| | || | || || |||||||| ||||||| Sbjct 4528 ATTCAGAAGGAGTCTACTCTTCATCTCGTTCTTCGCTTGAGAGGAGGACAATAAAT 4473 >seq1344 Length=40060 Score = 95.1 bits (104), Expect = 2e-14 Identities = 156/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 146033 GCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACGA 146092 |||||| ||| |||| ||| | |||||||| ||||| || | || |||||| | || Sbjct 24434 GCAAATCTTCGTAAAGACACTTACAGGAAAGACAATCACCCTCGAAGTAGAATCTTCAGA 24375 Query 146093 TACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACA 146152 || || | || || || |||||| ||| || || || || || ||||| ||||| Sbjct 24374 CACCATCGACAACGTCAAGGCTAAAATTCAAGACAAGGAGGGAATCCCCCCCGACCAACA 24315 Query 146153 AAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATAT 146212 ||||||||||| || || || ||| | || || | || | | || ||||| || Sbjct 24314 GAGACTCATTTTCGCCGGAAAGCAACTCGAGGACGGACGTACTCTCTCTGACTATAACAT 24255 Query 146213 ACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 || || || || || |||| ||||| ||||| | |||||||| Sbjct 24254 CCAGAAGGAGTCCACGCTCCACTTAGTTTTACGTCTCAGAGGAGG 24210 >seq1825 Length=10169 Score = 89.7 bits (98), Expect = 8e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 146127 AAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGAT 146186 || ||||| || |||||||||||||| |||||||||||||| || || || | || ||| Sbjct 16 AAGGAAGGAATCCCACCCGATCAACAGAGACTCATTTTTGCCGGAAAGCAGCTCGAGGAT 75 Query 146187 AATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTATTACGA 146246 | || | | || ||||| || || || || |||||| | ||| | || | || Sbjct 76 GGACGCACACTGAGCGACTATAACATCCAGAAGGAGTCGACTCTTCATCTCGTTCTTCGC 135 Query 146247 TTAAGAGGAGGTAAATAAATATTGAAAAT 146275 || |||||||| ||||||| ||||| || Sbjct 136 TTGAGAGGAGGACAATAAATTTTGAACAT 164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786141075614840