Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq343 134 1e-26 seq1766 113 3e-20 seq2113 102 6e-17 seq593 102 6e-17 seq2313 87.8 1e-12 >seq343 Length=26413 Score = 134 bits (148), Expect = 1e-26 Identities = 169/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 29556 TTGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC 29615 ||||||||| ||||| || || || | |||||| || || || || ||||||||||| || Sbjct 306 TTGTCCTCCTCTCAAGCGAAGAACGAGATGAAGAGTAGACTCCTTCTGAATGTTATAGTC 247 Query 29616 CGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGG 29675 | | ||| || ||| ||||| || || || ||| | || | ||| || ||||| || Sbjct 246 TGAGAGGGTACGGCCATCCTCGAGCTGCTTTCCGGCAAAAATGAGTCTCTGTTGATCGGG 187 Query 29676 CGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTC 29735 || || || ||||||||||||| || ||| || | || | |||||| ||| || Sbjct 186 TGGGATGCCTTCTTTGTCTTGTATCTTGGCTTTTACGTTGTCGATAGTGTCTGAACTCTC 127 Query 29736 TACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||||| || || || || || ||||| || || || || || ||||||||| Sbjct 126 TACTTCGAGGGTGATTGTCTTTCCAGTCAAAGTCTTGACGAAAATCTGCATT 75 >seq1766 Length=5059 Score = 113 bits (124), Expect = 3e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 29556 TTGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC 29615 ||||||||| ||||| || || || | |||||| || || || || ||||||||||| || Sbjct 4478 TTGTCCTCCTCTCAAGCGAAGAACGAGATGAAGAGTAGACTCCTTCTGAATGTTATAGTC 4537 Query 29616 CGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGG 29675 | | ||| || || || | ||| || || ||| | || | ||| || ||||| || Sbjct 4538 TGAGAGGGTTCGGCCGTCCTCTAATTGCTTTCCGGCAAAAATGAGTCTCTGTTGATCAGG 4597 Query 29676 CGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTC 29735 ||||| || || |||||||| | || ||| ||| | || | ||||| || || Sbjct 4598 GGGAATTCCTTCCTTGTCTTGGATCTTGGCTTTTACATTGTCGATGGTGTCTGAGCTCTC 4657 Query 29736 TACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||||| || || || || || ||||| | ||| || || || || |||||| Sbjct 4658 TACTTCGAGTGTGATTGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCATT 4709 >seq2113 Length=21246 Score = 102 bits (112), Expect = 6e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| || | ||| || || | ||||| ||||| || || || || || || || | Sbjct 21149 TCCTCCTCTGAGACGGAGGACGAGGTGAAGAGTGGACTCCTTCTGGATATTGTAGTCAGA 21090 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || || || |||||||| || || || | ||||||||||| ||||| || || Sbjct 21089 GAGAGTACGTCCGTCCTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGTTGATCAGGGGG 21030 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||| ||||| |||||||| | || ||| || | || | |||||||| || || Sbjct 21029 AATTCCCTCCTTGTCTTGGATCTTCGCTTTTACGTTGTCGATGGTGTCAGAGCTCTCGAC 20970 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || || ||||| || || || | ||| || || || ||||||||| Sbjct 20969 CTCGAGGGTGATAGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCATT 20921 >seq593 Length=28782 Score = 102 bits (112), Expect = 6e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| || | ||| || |||| |||||| || || || || ||||||||||| || | Sbjct 28432 TCCTCCTCTGAGACGAAGAACCAGATGAAGAGTAGACTCCTTCTGAATGTTATAGTCTGA 28491 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | ||| || || || | ||| || || || | || | ||| || ||||| || || Sbjct 28492 GAGGGTTCGGCCGTCCTCTAATTGCTTTCCGGCGAAGATGAGTCTCTGTTGATCAGGGGG 28551 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||| || || |||||||||| || ||| ||| | || | || || || ||||| Sbjct 28552 AATTCCTTCCTTGTCTTGTATCTTGGCTTTTACATTGTCGATGGTATCTGAGCTCTCTAC 28611 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||| || || || || || ||||| | ||| || || || || |||||| Sbjct 28612 TTCGAGTGTGATTGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCATT 28660 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| || | ||| | || ||||| || || ||||| || || ||||| || || Sbjct 15879 TCCTCCTCTGAGACGTAAGACTAAATGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGCT 15938 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || | || || | ||| || || || | || | ||| |||||||| || || Sbjct 15939 TAAAGTTCTGCCGTCCTCTAATTGCTTTCCGGCGAAAATGAGTCTCTGCTGATCGGGTGG 15998 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || |||||||||||||| | || ||||||| | || | || || ||| || || Sbjct 15999 GATTCCCTCTTTGTCTTGGATCTTGGCTTTGACATTGTCGATGGTATCTGAAGACTCGAC 16058 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||| | || || || |||||||| | ||||| || || || |||||| Sbjct 16059 TTCTAAGGTAATTGTCTTGCCAGTGAGAGTTTTGACGAAAATTTGCATT 16107 >seq2313 Length=44285 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| || | ||| || || | || |||||||| || ||||||||||| || || Sbjct 27871 CCTCCTCTGAGACGAAGAACAAGGTGGAGCGTGGACTCCTTTTGAATGTTGTAGTCGCTG 27812 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| | || || || || || || || | || | ||| || || || || ||| Sbjct 27811 AGGGTTCTTCCGTCCTCTAGCTGCTTTCCGGCGAAGATGAGTCTCTGTTGGTCTGGTGGA 27752 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || |||||||| | || ||||| | |||| || || ||| ||| ||| Sbjct 27751 ATGCCTTCCTTGTCTTGGATCTTAGCCTTGACGTTGTCTATTGTATCTGAAGATTCAACT 27692 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || || || || || ||||| | ||| || || || ||||||||| Sbjct 27691 TCGAGGGTGATTGTCTTTCCAGTGAGGGTCTTTACGAAGATCTGCATT 27644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385207101348357