Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1561 107 1e-17 seq2048 87.8 1e-11 >seq1561 Length=19091 Score = 107 bits (118), Expect = 1e-17 Identities = 103/132 (78%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 282341 AGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCA 282400 |||||| | |||| |||||| || ||||| || |||||||| | |||| | ||| Sbjct 5149 AGACCAAAGGCAAGAGCAGCGGCGGTTGGCTCGTTAATAATACGTTCGACATCGAAACCG 5090 Query 282401 GCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACA 282460 || ||||||||||| || || |||||||||||||| |||||||| || |||||||| || Sbjct 5089 GCGATTCTTCCTGCGTCCTTTGTGGCTTGTCTTTGGGAATCGTTGAAGTATGCAGGGACG 5030 Query 282461 GTAATAACGGCA 282472 || || || ||| Sbjct 5029 GTGATGACAGCA 5018 >seq2048 Length=17775 Score = 87.8 bits (96), Expect = 1e-11 Identities = 117/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 400264 GCTCACAAAGCAGGAACCAAAGAAGGATATAAATGTACCCTAATTTTGACAGAGGGAGAT 400323 ||| || |||| ||| |||||| | || ||||| || |||||||| ||||||||| Sbjct 8097 GCTAACGAAGCCGGAGGAAAAGAATCAAGAAACTGTACGCTCATTTTGACTGAGGGAGAT 8038 Query 400324 TCAGCTAAAACATTCGCTATGTCT-GGCCTTAATGTTATTGGAAGAGATTATTATGGAGT 400382 ||||| || | || ||| | || || || |||| | ||||||||||||| || | Sbjct 8037 TCAGCCAAGGCCTTGGCT-TCTCACGGTCTCGATGTGGTCGGAAGAGATTATTTCGGTAT 7979 Query 400383 TTTCCCACTTAGAGGAAAACTTTTGAATGTTAGGGATGCT 400422 ||||| || ||||||||||| |||| | |||| |||| Sbjct 7978 CTTCCCGCTCAGAGGAAAACTGCTGAACGCGAGGGGTGCT 7939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740503880190402