Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq1044 102 8e-17 seq593 89.7 5e-13 seq1239 86.0 6e-12 >seq1044 Length=18651 Score = 102 bits (112), Expect = 8e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 137203 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTC 137261 || || |||| ||||| ||||| ||||||||||| || |||| ||||| || | ||||| Sbjct 18577 ACCAAGTGAAGGGTAGACTCTTTCTGTATGTTGTAGTCACTCAGTGTGCGTCCA-TCTTC 18519 Query 137262 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 137321 ||||| || ||||| |||| || | || || ||||| || || || || ||||| Sbjct 18518 CAGTTGCTTTCCAGCGAAGATGAGTCTCTGTTGGTCGGGTGGGATTCCCTCCTTGTCTTG 18459 Query 137322 AATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTT 137381 || || ||||| | || | || |||| || ||||| | || | ||||| Sbjct 18458 TATCTTGGCTTTTACATTATCGATGGTATCTGAACTCTCGACTTCCAATGTGATTGTCTT 18399 Query 137382 GCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||||| | ||| |||||||| |||||||| Sbjct 18398 GCCGGTGAGTGTCTTTACGAAGATTTGCAT 18369 >seq593 Length=28782 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||||| | ||| || |||||||| | || ||||| || || |||||||| ||||| Sbjct 15880 CCTCCTCTGAGACGTAAGACTAAATGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGCTT 15939 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || ||| || | ||| || || || | || || | ||||||||||| || Sbjct 15940 AAAGTTCTGCCGTCCTCTAATTGCTTTCCGGCGAAAATGAGTCTCTGCTGATCGGGTGGG 15999 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || || |||||||| || || ||| | | || | || |||| | || ||| Sbjct 16000 ATTCCCTCTTTGTCTTGGATCTTGGCTTTGACATTGTCGATGGTATCTGAAGACTCGACT 16059 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | |||||||| || | ||||| ||||| |||||||| Sbjct 16060 TCTAAGGTAATTGTCTTGCCAGTGAGAGTTTTGACGAAAATTTGCAT 16106 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 137182 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 137241 || ||||||| | ||||| || | |||| ||||||||||| || |||||||| || Sbjct 15421 TGTCCTCCTCTAAGACGCAGGACAAGGTGAAGAGTAGATTCTTTCTGGATGTTGTAGTCA 15480 Query 137242 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 137301 | || || ||| || || || || || ||| | || || | || || |||||| Sbjct 15481 GAAAGAGTTCTGCCGTCCTCAAGCTGCTTTCCGGCAAAAATGAGTCTCTGTTGGTCGGGA 15540 Query 137302 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCT 137361 || || ||||| ||||| ||| || || | | || | || |||| || |||| Sbjct 15541 GGGATTCCTTCCTTGTCTTGAATCTTGGCCTTAACATTGTCGATAGTATCTGAGGATTCT 15600 Query 137362 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||||| | || | ||||||||||| | ||||| || || || ||||| Sbjct 15601 ACTTCTAAGGTGATGGTCTTGCCGGTGAGAGTTTTGACAAAAATCTGCAT 15650 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || |||| | ||| || || ||||| | ||||| || || || ||||||||||||||| Sbjct 16108 CCACCTCTAAGACGTAATACCAAATGGAGAGTAGACTCCTTCTGGATGTTGTAATCGCTC 16167 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | |||| |||||| | || || || || |||| || | || |||||||| || Sbjct 16168 AAAGTGCGGCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGTCTCTGTTGATCGGGTGGG 16227 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| ||||| || || |||| | || | ||||||| || ||| Sbjct 16228 ATTCCTTCCTTGTCTTGGATCTTGGCCTTTACATTATCGATTGTGTCTGAACTCTCCACT 16287 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | ||||| || || | ||| || ||||| |||||||| Sbjct 16288 TCGAGTGTGATTGTCTTTCCAGTTAGTGTCTTAACGAAGATTTGCAT 16334 >seq1239 Length=29077 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||||| || | ||| || | |||| || || ||||| || || ||||| || Sbjct 23344 CCTCCTCTCAATCTCAACACGAGGTGAAGGGTGGACTCTTTCTGGATATTGTAGTCTGAG 23403 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || ||| |||||||| || || || | || || | ||| || |||||||| Sbjct 23404 AGGGTCCTGCCGTCCTCGAGTTGCTTTCCGGCGAAAATGAGTCTTTGTTGGTCGGGAGGG 23463 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 ||||| || ||||| ||| || || | | || | ||||||| | || || Sbjct 23464 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCTGAGCTCTCCACC 23523 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | ||| | ||||| ||||||||||||||||| || || ||||| Sbjct 23524 TCCAAAGTGATGGTCTTTCCGGTCAATGTTTTTACAAAGATCTGCAT 23570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488528262776400