Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1441 96.9 8e-15 seq1881 91.5 3e-13 >seq1441 Length=33442 Score = 96.9 bits (106), Expect = 8e-15 Identities = 140/197 (71%), Gaps = 3/197 (2%) Strand=Plus/Plus Query 110667 AAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATAT 110726 || ||||| || | |||||| || || ||| | ||||||||||| ||||||||| ||| Sbjct 1867 AATGGTGCCTCTAATGGACTCGTCCCCATGCTTAGAGTCTTCAATGACACTGCACGTTAT 1926 Query 110727 GTGAATCA---AGGTGGTAAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCAT 110783 || | || |||||||||||| || || | ||||| | ||||| || || |||||| Sbjct 1927 GTCGACCAAGGAGGTGGTAAGAGGAAGGGTGCCTTTGCCGTTTATCTGGAGCCATGGCAT 1986 Query 110784 TCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCA 110843 | || || || || || || || | || ||||| ||| ||||| |||||| Sbjct 1987 GCCGACATCACCGAGTTTTTGGATCTCAGAAAGAATCACGGAAAAGAAGAGAGGAGAGCA 2046 Query 110844 CGTGATTTATTTTATGC 110860 ||||| | ||||| || Sbjct 2047 CGTGACCTCTTTTACGC 2063 >seq1881 Length=25171 Score = 91.5 bits (100), Expect = 3e-13 Identities = 264/392 (67%), Gaps = 27/392 (7%) Strand=Plus/Plus Query 131799 AAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAAT-TTTTCTACA 131857 ||||||| ||||| ||||| || ||||| ||| ||||| | | | |||| | | Sbjct 17837 AAAAGAAGGCAGAGTGGGCAATGCGCTGGAT-CAAC--GATTCGG--ACTCTTTTGGAGA 17891 Query 131858 -AGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTAT 131916 ||||| || || |||||| ||| || ||||| |||||||| ||| | ||||| | || Sbjct 17892 GAGACTCGTTGCCTTTGCTGCTGTGGAGGGTATCTTCTTTTCTGGTTCCTTCTGCTCCAT 17951 Query 131917 CTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTC 131976 ||||||||| |||||| | ||| | ||| || || | || ||| ||||||| || Sbjct 17952 CTTTTGGCTGAAGAAGAGGGGACTCATGGAGGGTCTTGGAAAATCAAATGAATTCATATC 18011 Query 131977 GAGAGATGAAGCATTGCATACTGAATTTGCT---ATATTAATCTATAGAAAATTTGCTGA 132033 |||||||||| | ||| || || ||| | ||| || || | |||| | Sbjct 18012 AAGAGATGAAGGGCTACATTGCGACTTCGCTTGCCTCTTATTC---AGCA----TGCTAA 18064 Query 132034 TAAACTTG--ATGAAAATAA-TATTAAACAACTTATAAGC---GAAGCAGTTGATATCGA 132087 |||| | || | || || | |||| | | || | | || || || ||| || Sbjct 18065 GAAACAAGCCATCACAAGAAGTCGTAAAGA--TGATCATCTTGGACGCCGTCGATTGTGA 18122 Query 132088 GAAGGAGTTTATTACAGAAGCTTTGCCTTGCAATTTGATTGGGATGAATGCTGACTCT-A 132146 |||||||||| | ||||| || || || | | || ||||||||||| || ||| | Sbjct 18123 GAAGGAGTTTGTCACAGACGCCTTACCCGTCGGCCTCATCGGGATGAATGCAGA-TCTGA 18181 Query 132147 TGAAGGAGTACATTGAATTCGTTGCTGATCGT 132178 || ||||||| ||||| || || |||||| Sbjct 18182 TGTCTCAGTACATCGAATTTGTCGCGGATCGT 18213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186773614037497