Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1344 98.7 7e-16 seq1239 89.7 3e-13 seq593 89.7 3e-13 seq1766 82.4 5e-11 >seq1344 Length=40060 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||| | ||| | ||||| || || ||| ||| || || |||||||| || ||| Sbjct 23982 CCTCCTCTGAGACGAAGTACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCTGAG 24041 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||||||| | || |||| ||| |||||||| || || | | ||| || || | || Sbjct 24042 AGTGTGCGTCCATCCTCCAGTTGCTTTCCGGCGAAGATGAGTCTCTGTTGGTCGGGGGGA 24101 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| || || || || | || ||||| ||| | ||||| ||||| || Sbjct 24102 ATTCCTTCCTTATCTTGGATCTT-GGCTTTAACATTGTCGATAGTGTCTGAAGATTCGAC 24160 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | ||||| |||||||| ||||| Sbjct 24161 TTCCAAGGTGATTGTCTTGCCGGTGAGAGTTTTGACAAAGATTTGCAT 24208 >seq1239 Length=29077 Score = 89.7 bits (98), Expect = 3e-13 Identities = 162/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||| |||| || | |||||||| || ||||| ||| || || ||||||||||| | Sbjct 23114 CACCTCCTCGTAATCTCAACACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCTG 23173 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 |||| ||||| | || ||||| || ||||| ||||| || | | ||| || || | | Sbjct 23174 AGAGAGTGCGGCCATCTTCCAACTGCTTTCCAGCAAAGATGAGTCTCTGTTGGTCGGGAG 23233 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGAT 33696 | | |||||| ||||| || || | | || | ||| | |||||| ||| Sbjct 23234 GGATACCTTCCTTGTCTTGGATCTT-GGCCTTGACGTTGTCGATGGTGTCTGAGCT---C 23289 Query 33697 TCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||||| || | ||||| || || || || | || || |||||||||||||| Sbjct 23290 TCCACCTCCAAAGTGATGGTCTTTCCGGTCAGGGTCTTGACAAAGATCTGCAT 23342 Score = 82.4 bits (90), Expect = 5e-11 Identities = 163/236 (69%), Gaps = 9/236 (4%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || |||||||| | ||||| | || || ||| |||||| || || ||||| || ||| Sbjct 23344 CCTCCTCTCAATCTCAACACGAGGTGAAGGGTGGACTCTTTCTGGATATTGTAGTCTGAG 23403 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || | |||| || | ||| |||||||| ||||| | | || || || | || Sbjct 23404 AGGGTCCTGCCGTCCTCGAGTTGCTTTCCGGCGAAAATGAGTCTTTGTTGGTCGGGAGGG 23463 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGAT---TC 33698 | || || ||||| ||| || || | | | ||| | |||||| ||| || Sbjct 23464 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGA-CGTTGTCGATGGTGTC---TGAGCTCTC 23519 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTG 33754 ||| || | ||||| || || || || || |||||||||||||||||||| |||| Sbjct 23520 CACCTCCAAAGTGATGGTCTTTCCGGTCAATGTTTTTACAAAGATCTGCAT-GTTG 23574 >seq593 Length=28782 Score = 89.7 bits (98), Expect = 3e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | |||||| |||||||| ||||| ||| || || |||||||||||| Sbjct 16108 CCACCTCTAAGACGTAATACCAAATGGAGAGTAGACTCCTTCTGGATGTTGTAATCGCTC 16167 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | ||||| |||| ||||| || |||||||| || || | | ||| ||||| | || Sbjct 16168 AAAGTGCGGCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGTCTCTGTTGATCGGGTGGG 16227 Query 33643 ACACCTTCTTTGTC 33656 | ||||| ||||| Sbjct 16228 ATTCCTTCCTTGTC 16241 >seq1766 Length=5059 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || |||||||| || | || | ||| ||||| ||| || || ||||| || || ||| Sbjct 4482 CCTCCTCTCAAGCGAAGAACGAGATGAAGAGTAGACTCCTTCTGAATGTTATAGTCTGAG 4541 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || |||| || ||||| |||||||||||||| | | ||| ||||| | || Sbjct 4542 AGGGTTCGGCCGTCCTCTAATTGCTTTCCGGCAAAAATGAGTCTCTGTTGATCAGGGGGA 4601 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTC 33698 | ||||| ||||| || || | || |||| ||| | |||||| ||| || Sbjct 4602 ATTCCTTCCTTGTCTTGGATCTT-GGCTTTTACATTGTCGATGGTGTCTGAGCT---CTC 4657 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | ||||| || || || || | || || || ||||| ||||| Sbjct 4658 TACTTCGAGTGTGATTGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCAT 4708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328693676331840