Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq343 98.7 9e-16 seq717 86.0 6e-12 seq2313 84.2 2e-11 >seq343 Length=26413 Score = 98.7 bits (108), Expect = 9e-16 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 |||||| | ||| | ||| | | ||||| || |||||||| ||||| | |||||| Sbjct 294 CAAGCGAAGAACGAGATGAAGAGTAGACTCCTTCTGAATGTTATAGTCTGAGAGGGTACG 235 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 ||| |||||||| || |||| | | || || | ||||||||| || || |||||||| Sbjct 234 GCCATCCTCGAGCTGCTTTCCGGCAAAAATGAGTCTCTGTTGATCGGGTGGGATGCCTTC 175 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 ||| || || || ||| | | || | ||| || | ||| ||||||| || Sbjct 174 TTTGTCTTGTATCTTGGCTTTTACGTTGTCGATAGTGTCTGAACTCTCTACTTCGAGGGT 115 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || || ||||||| ||| || | |||||||||||| Sbjct 114 GATTGTCTTTCCAGTCAAAGTCTTGACGAAAATCTGCAT 76 >seq717 Length=13837 Score = 86.0 bits (94), Expect = 6e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||||||||| |||||||||||| | ||| ||| ||| || | ||| || |||| Sbjct 197 GACTCTTTTTGGATGTTGTAGTCGGAGAGGGTGCGCCCATCCTCTAACTGCTTTCCGGCG 256 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | | ||||||||| ||||| || ||||| || || ||| || || | Sbjct 257 AAGATCAATCTCTGTTGATCGGGAGGGATTCCTTCCTTGTCTTGAATCTTGGCCTTGACG 316 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || |||| | ||| ||||| | || | || || || || || || ||| Sbjct 317 TTATCGATGGTGTCGGAGGACTCTACTTCCAAAGTAATAGTCTTTCCTGTGAGGGTCTTT 376 Query 132110 ATGAAAATCTGCATG 132124 | ||||||||||||| Sbjct 377 ACGAAAATCTGCATG 391 >seq2313 Length=44285 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| |||||||||||||||||||| | ||| | || || ||||| || |||| Sbjct 27838 GACTCCTTTTGAATGTTGTAGTCGCTGAGGGTTCTTCCGTCCTCTAGCTGCTTTCCGGCG 27779 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | |||||| ||||| || |||||||| || || || || || | Sbjct 27778 AAGATGAGTCTCTGTTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATCTTAGCCTTGACG 27719 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||||| | | || ||||||| || | || || ||||| || || ||| Sbjct 27718 TTGTCTATTGTATCTGAAGATTCAACTTCGAGGGTGATTGTCTTTCCAGTGAGGGTCTTT 27659 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 27658 ACGAAGATCTGCAT 27645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476595847161720