Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq1239 141 8e-29 seq2113 120 3e-22 seq2313 111 1e-19 seq593 111 1e-19 seq1766 105 6e-18 seq343 84.2 2e-11 >seq1239 Length=29077 Score = 141 bits (156), Expect = 8e-29 Identities = 174/235 (74%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 25170 ACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-A 25228 |||||||||| | |||||||||||||| |||||||| | ||||| | || || || | Sbjct 23575 ACAACATGCAGATCTTTGTAAAAACATTGACCGGAAAGACCATCACTTTGGAGGTGGAGA 23516 Query 25229 GCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCC 25288 || | || || ||||| | || || || ||| || || ||||| || || ||| Sbjct 23515 GCTCA-GACACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCC 23457 Query 25289 GATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGAT 25348 || || ||||||||||||| || ||| || |||||||| || | || | || || Sbjct 23456 GACCAACAAAGACTCATTTTCGCCGGAAAGCAACTCGAGGACGGCAGGACCCTCTCAGAC 23397 Query 25349 TACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 |||||||| || ||||| |||||| |||| | ||||| |||||||||||||||| Sbjct 23396 TACAATATCCAGAAAGAGTCCACCCTTCACCTCGTGTTGAGATTGAGAGGAGGAA 23342 >seq2113 Length=21246 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || || |||||||| | ||||| |||| ||||| || | Sbjct 20694 ATGCAAATTTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTCGAGGTCGAGTCCTCC 20753 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || || || ||| ||||| ||||| || || ||||| || Sbjct 20754 GACACCATCGACAATGTGAAGGCCAAGATTCAAGATAAGGAGGGAATCCCCCCCGACCAA 20813 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || |||||||||| || ||| || || || || || | ||||| | ||||||| |||||| Sbjct 20814 CAGAGACTCATTTTCGCCGGAAAGCAGCTTGAGGACGGTAGAACTCTCAGCGACTACAAT 20873 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 || || || || ||||| |||| | || | | |||||||||||| Sbjct 20874 ATCCAGAAGGAGTCCACTCTTCACCTTGTACTTCGTCTGAGAGGAGGAA 20922 >seq2313 Length=44285 Score = 111 bits (122), Expect = 1e-19 Identities = 148/203 (73%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 25170 ACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-A 25228 |||||||||| | |||||||| || ||||||||||| | ||||| | |||||||| | Sbjct 27412 ACAACATGCAGATTTTTGTAAAGACTTTAACCGGAAAGACCATCACTTTGGAAGTCGAGA 27471 Query 25229 GCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCC 25288 || | || || ||||| | ||||| || || ||||| ||||| ||||| || Sbjct 27472 GCTCA-GACACCATCGACAATGTAAAGGCCAAGATCCAAGATAAGGAGGGAATACCCCCA 27530 Query 25289 GATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGAT 25348 || || || |||||||| | || || || || || || |||| |||| ||||||| Sbjct 27531 GACCAACAGAGACTCATCTTCGCTGGAAAGCAGCTGGAGGATGGAAGAACCCTCAGCGAC 27590 Query 25349 TACAATATTCAAAAAGAATCCAC 25371 ||||| || || ||||| ||||| Sbjct 27591 TACAACATACAGAAAGAGTCCAC 27613 >seq593 Length=28782 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||| | || || || | || || | |||||||| | Sbjct 16106 ATGCAAATTTTCGTCAAAACTCTCACTGGCAAGACAATTACCTTAGAAGTCGAGTCTTCA 16047 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| ||||| | || ||| || || || |||||||| || || ||||||||| Sbjct 16046 GATACCATCGACAATGTCAAAGCCAAGATCCAAGACAAAGAGGGAATCCCACCCGATCAG 15987 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || |||||||||| || ||| || ||| | || || | |||| | | ||||| ||||| Sbjct 15986 CAGAGACTCATTTTCGCCGGAAAGCAATTAGAGGACGGCAGAACTTTAAGCGACTACAAC 15927 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 || || || ||||| || | |||||||| ||| | | |||||||||| Sbjct 15926 ATCCAGAAGGAATCGACTCTCCATTTAGTCTTACGTCTCAGAGGAGGAA 15878 Score = 91.5 bits (100), Expect = 1e-13 Identities = 164/237 (69%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 25168 AAACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA 25227 || |||||||||| | || || || ||| |||| ||||| | ||||| ||||||| || Sbjct 16341 AAGCAACATGCAAATCTTCGTTAAGACACTAACTGGAAAGACAATCACACTCGAAGTGGA 16282 Query 25228 -AGCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGC 25286 || | || || ||||| | ||||| || || || || || || || || | Sbjct 16281 GAGTTCA-GACACAATCGATAATGTAAAGGCCAAGATCCAAGACAAGGAAGGAATCCCAC 16223 Query 25287 CCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCG 25346 ||||||| || |||||||| | || ||| || || | ||||| | | | | | |||| Sbjct 16222 CCGATCAACAGAGACTCATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGCACTTTGAGCG 16163 Query 25347 ATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 ||||||| || || || || || || | ||||| || ||| | | ||||| |||| Sbjct 16162 ATTACAACATCCAGAAGGAGTCTACTCTCCATTTGGTATTACGTCTTAGAGGTGGAA 16106 >seq1766 Length=5059 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGCCAA 25233 ||||| | || || || || || || ||||| | ||||| ||||||| || ||| | Sbjct 4936 ATGCAGATTTTCGTTAAGACTTTGACTGGAAAGACAATCACCCTCGAAGTGGAGAGCTCA 4877 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || ||||| | |||||| || || || || ||||| || || |||||||| Sbjct 4876 -GACACCATCGACAATGTAAAAGCCAAGATACAAGACAAGGAGGGAATCCCACCCGATCA 4818 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 || |||||||||| || ||| || ||| | || |||| | | | ||||| ||||| Sbjct 4817 ACAGAGACTCATTTTCGCCGGAAAGCAATTAGAGGATGGACGCACACTTAGCGACTACAA 4758 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 ||||||||| || || || | || ||||| ||| | | |||||||||| Sbjct 4757 TATTCAAAAGGAGTCTACTCTCCACTTAGTTTTACGTCTCAGAGGAGGAA 4708 >seq343 Length=26413 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGCCAA 25233 ||||| | || || || || || || ||||| | ||||| ||||||| || || | Sbjct 76 ATGCAGATTTTCGTCAAGACTTTGACTGGAAAGACAATCACCCTCGAAGTAGAGAGTTCA 135 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || |||||||| | |||||| || || || ||||| || || || |||||||| Sbjct 136 -GACACTATCGACAACGTAAAAGCCAAGATACAAGACAAAGAAGGCATCCCACCCGATCA 194 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 || |||||||||| | ||| || || ||||| |||| | | || || || || Sbjct 195 ACAGAGACTCATTTTTGCCGGAAAGCAGCTCGAGGATGGCCGTACCCTCTCAGACTATAA 254 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAAAAT 25406 ||||| || || || || ||||| | || | | |||||||||||| ||| Sbjct 255 CATTCAGAAGGAGTCTACTCTTCATCTCGTTCTTCGCTTGAGAGGAGGACAAT 307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445080062396640