Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq2030 93.3 5e-14 seq637 93.3 5e-14 >seq2030 Length=13636 Score = 93.3 bits (102), Expect = 5e-14 Identities = 266/420 (63%), Gaps = 47/420 (11%) Strand=Plus/Minus Query 146772 CTAAACCGCCAGCGCCATGGGGATGGAGGGGTGCGGGTGGTAGCCCTCGAGGGCAAAATC 146831 ||| || |||| | |||| | |||| | || || | |||| || | || |||| | Sbjct 12837 CTACACGGCCATCTCCATCGCAATGGTGCCATGAGGTTTGTAGTCCACCAGTTCAAAGTG 12778 Query 146832 TTCTGCCCTGAAATCGTCTATGTCCTCCACCC--GCCTCAAAATCTTGAGCTTGGGGAAG 146889 ||| | ||||||| || |||| || ||| | | || | |||||| ||||||| Sbjct 12777 TTCCATCTTGAAATCATCAATGTTCTTCACGCTGGGGTCCAC--CTTGAGAGTGGGGAAA 12720 Query 146890 GGTCGGGGGTTCCTGGCCAGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGC 146949 |||| || | || | || || ||||||| ||||| |||||||| |||||| || Sbjct 12719 GGTCTCGGCTCTCTTTCTAGTTGGGTTTTCAGAGGCTCGACGTGGTTCGTGTAGACATGA 12660 Query 146950 GCGTCCCCCAGGGTGTGCACAAAGTCCCCCG----------------------------- 146980 ||||| ||||| ||||||||||| || || | Sbjct 12659 GCGTCTCCCAGAGTGTGCACAAAATCACCTGAGTGATGTTACATTCCACCATGTTTGAAG 12600 Query 146981 --------------GCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTA 147026 |||| |||||| || ||||| | ||| || | || | ||| Sbjct 12599 AATTGGCACACCTGGCTTGAGGCCGCAGACTTGGGCGATCATCACAGTTAAAAGGGCGTA 12540 Query 147027 GCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCA 147086 ||| ||||||||||| || || | |||||||| | || |||||||||| |||||| Sbjct 12539 AGAGGCAATGTTGAAGGGAACACCTAATCCCATGTCGGCTGATCTCTGGTACATCTGGCA 12480 Query 147087 CGAGAGCTCCCCGTCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 || | ||| || | |||||| ||||| || || | ||||| || || || || ||||| Sbjct 12479 AGATAACTCGCCATTGGCCACATAAAATTGACAAAACATGTGACAAGGAGGAAGGGCCAT 12420 >seq637 Length=38019 Score = 93.3 bits (102), Expect = 5e-14 Identities = 266/420 (63%), Gaps = 47/420 (11%) Strand=Plus/Minus Query 146772 CTAAACCGCCAGCGCCATGGGGATGGAGGGGTGCGGGTGGTAGCCCTCGAGGGCAAAATC 146831 ||| || |||| | |||| | |||| | || || | |||| || | || |||| | Sbjct 11726 CTACACGGCCATCTCCATCGCAATGGTGCCATGAGGTTTGTAGTCCACCAGTTCAAAGTG 11667 Query 146832 TTCTGCCCTGAAATCGTCTATGTCCTCCACCC--GCCTCAAAATCTTGAGCTTGGGGAAG 146889 ||| | ||||||| || |||| || ||| | | || | |||||| ||||||| Sbjct 11666 TTCCATCTTGAAATCATCAATGTTCTTCACGCTGGGGTCCAC--CTTGAGAGTGGGGAAA 11609 Query 146890 GGTCGGGGGTTCCTGGCCAGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGC 146949 |||| || | || | || || ||||||| ||||| |||||||| |||||| || Sbjct 11608 GGTCTCGGCTCTCTTTCTAGTTGGGTTTTCAGAGGCTCGACGTGGTTCGTGTAGACATGA 11549 Query 146950 GCGTCCCCCAGGGTGTGCACAAAGTCCCCCG----------------------------- 146980 ||||| ||||| ||||||||||| || || | Sbjct 11548 GCGTCTCCCAGAGTGTGCACAAAATCACCTGAGTGATGTTACATTCCACCATGTTTGAAG 11489 Query 146981 --------------GCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTA 147026 |||| |||||| || ||||| | ||| || | || | ||| Sbjct 11488 AATTGGCACACCTGGCTTGAGGCCGCAGACTTGGGCGATCATCACAGTTAAAAGGGCGTA 11429 Query 147027 GCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCA 147086 ||| ||||||||||| || || | |||||||| | || |||||||||| |||||| Sbjct 11428 AGAGGCAATGTTGAAGGGAACACCTAATCCCATGTCGGCTGATCTCTGGTACATCTGGCA 11369 Query 147087 CGAGAGCTCCCCGTCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 || | ||| || | |||||| ||||| || || | ||||| || || || || ||||| Sbjct 11368 AGATAACTCGCCATTGGCCACATAAAATTGACAAAACATGTGACAAGGAGGAAGGGCCAT 11309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583469204392800