Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq455 152 7e-31 seq1441 147 3e-29 seq1881 116 5e-20 >seq455 Length=31299 Score = 152 bits (168), Expect = 7e-31 Identities = 240/339 (71%), Gaps = 11/339 (3%) Strand=Plus/Minus Query 1455976 CCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACC 1456035 || ||||| || | ||||| ||||| || || ||||| || ||||| ||| |||| || Sbjct 8920 CCTGAGGCGCGATGCTTTTATGGGTTTCAAATTGCCATTGAGAACATACACGCTGAGACT 8861 Query 1456036 TACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGC 1456095 || || ||| |||| ||||| ||| |||||||||| |||||||| ||||| | Sbjct 8860 TATTCTCTCTTGATAGACACGTACATCAAGGACCCCACCGAGAAGGCAATGCTCTTCCAT 8801 Query 1456096 GCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAAC 1456155 ||||||||| | || | | | || ||||| |||||||| | |||||||| Sbjct 8800 GCCATCGACCACATCCCCTGCATCAAAAAGAAGGCGGACTGGGCTCTTCGCTGGATCAAT 8741 Query 1456156 AAGGAGGGCCTCGACACTTT-GCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATC 1456213 | |||| |||| | || || ||||||| || || || || ||||||||| Sbjct 8740 GATTC------CGACTCTTTCGGAGAACGCCTCGTCGCTTTCGCTGCCGTAGAGGGCATC 8687 Query 1456214 TTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGT 1456273 || ||||| || ||||| ||||||||||| | |||||| | || |||||||| ||| Sbjct 8686 TTCTTCTCTGGTTCCTTCTGTTCCATCTTTTGGTTGAAGAAGAGAGGTCTCATGCCAGGT 8627 Query 1456274 C-TTCTGCTTTAGCAACGAATTTATCAGTCGCGACGAAG 1456311 | ||| | | | ||||||||||| ||||||||||| Sbjct 8626 CTTTCCACATCA--AACGAATTTATTTCTCGCGACGAAG 8590 Score = 134 bits (148), Expect = 2e-25 Identities = 231/327 (71%), Gaps = 10/327 (3%) Strand=Plus/Minus Query 1456454 CACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCC--GTCGACCGA-C 1456510 ||||| ||||||||||| ||||||| || ||||| | || || | | | || | Sbjct 8584 CACTGCGACTTTGCCTGCCTGCTCTTCAACATGCTACAAGAGAAACCCAGCCAAGAGACC 8525 Query 1456511 GTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCG 1456570 ||| ||| |||||||| | || ||||| ||| |||||| |||||||||| |||| | Sbjct 8524 GTG---AAGAAGATCATCCTTGACGCCGTGGAGTGCGAGAAGGAGTTTGTCACCGAGGCT 8468 Query 1456571 CTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTG 1456630 |||| || | || || || |||||||||| | || ||| ||||| || | | |||| Sbjct 8467 TTGCCAGTTGGTCTGATTGGAATGAACGCCAAC-CTGATGACACAGTATATCG-AGTTTG 8410 Query 1456631 TCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCG 1456690 ||||||| | ||||||| || ||| ||| ||||||| || | | ||||| Sbjct 8409 TCGCCGATAGACTGCTCGTCGCCCTCAAGTGC-CCCAAGCACTTCCATGCCGAGAACCCC 8351 Query 1456691 TTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGTG 1456750 || ||||||| | ||||| || | || ||||||||||| || ||||| | || Sbjct 8350 TTTGATTGGATGGTCCTCATCTCTCTGCAAGGAAAGACCAACTTCTTTGAGCGTAGAGTC 8291 Query 1456751 GC-GAGTACGCCAAGGCCGGCGTCACC 1456776 | |||||||||||||| || ||| || Sbjct 8290 TCAGAGTACGCCAAGGCTGGTGTCGCC 8264 >seq1441 Length=33442 Score = 147 bits (162), Expect = 3e-29 Identities = 203/284 (71%), Gaps = 0/284 (0%) Strand=Plus/Plus Query 259898 TCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCG 259957 || || | ||| ||||| || || ||||| || || || | ||||| || | || Sbjct 1651 TCCCAACTGTTTTTCACACACGCCACACCCACACTTTTCAACTCTGGCACACCAAGACCT 1710 Query 259958 CAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGAC 260017 |||| || || ||||| || ||||||||||||| ||||| |||||||| ||||| ||| Sbjct 1711 CAGATGTCTTCCTGCTTCCTTTTGGACATGAAGGAGGATTCTATCGAGGGTATCTACGAC 1770 Query 260018 ACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACAC 260077 || || ||||||||||| |||||||| || | ||||| ||||||||| | | || ||| Sbjct 1771 ACTCTAAAGCAGTGCGCTCTCATCTCTAAATCTGCCGGAGGCATCGGTCTGTCTGCCCAC 1830 Query 260078 AAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTG 260137 ||| | | || || | | ||| | || || || || || || || || || Sbjct 1831 AAGATCAGAGCTGCAGACAGTTACATCAGAGGAACAAATGGTGCCTCTAATGGACTCGTC 1890 Query 260138 CCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCA 260181 ||||||||| | || || || ||||| || || || |||||||| Sbjct 1891 CCCATGCTTAGAGTCTTCAATGACACTGCACGTTATGTCGACCA 1934 >seq1881 Length=25171 Score = 116 bits (128), Expect = 5e-20 Identities = 211/303 (70%), Gaps = 8/303 (3%) Strand=Plus/Plus Query 1455976 CCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACC 1456035 |||||||| | | ||||| || || ||||| ||||| || ||||| || | ||||| Sbjct 17692 CCAGAGGCCAGATGCTTTTATGGCTTTCAGATTGCCATAGAGAACATACATGCCGAAACA 17751 Query 1456036 TACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGC 1456095 ||||| || ||||||||||| || || || | |||||| ||| | | || | | Sbjct 17752 TACTCTCTTCTGATCGACACGTATATCCGAGATGAGAAAGAGAAGCACCTCTTATTCCAC 17811 Query 1456096 GCCATCGA-CACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAA 1456154 || ||||| ||| | || | | || ||||| || ||||| ||| |||||||| Sbjct 17812 GCTATCGATCAC-ATTCCTTGCATACAAAAGAAGGCAGAGTGGGCAATGCGCTGGATCAA 17870 Query 1456155 CAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATC 1456213 | | || ||| |||| ||| | ||||| | |||||| || || ||||| ||| Sbjct 17871 CGA-TTCGGACTC----TTTTGGAGAGAGACTCGTTGCCTTTGCTGCTGTGGAGGGTATC 17925 Query 1456214 TTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGT 1456273 || || || || |||||| ||||||||||||| |||||| | || |||||| ||| Sbjct 17926 TTCTTTTCTGGTTCCTTCTGCTCCATCTTTTGGCTGAAGAAGAGGGGACTCATGGAGGGT 17985 Query 1456274 CTT 1456276 ||| Sbjct 17986 CTT 17988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177562643613474