Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1441 129 8e-25 seq1881 120 4e-22 seq455 100 4e-16 >seq1441 Length=33442 Score = 129 bits (142), Expect = 8e-25 Identities = 304/459 (66%), Gaps = 0/459 (0%) Strand=Plus/Minus Query 69633 AAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTC 69692 |||||| || | | ||| | ||||| ||||| ||| ||| | ||||| | |||||| Sbjct 2058 AAAGAGGTCACGTGCTCTCCTCTCTTCTTTTCCGTGATTCTTTCTGAGATCCAAAAACTC 1999 Query 69693 CATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCC 69752 | || || | ||||||||| || ||||| | || | | | ||| | ||| || Sbjct 1998 GGTGATGTCGGCATGCCATGGCTCCAGATAAACGGCAAAGGCACCCTTCCTCTTACCACC 1939 Query 69753 TCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATT 69812 ||| || || | || | ||||||| ||| ||||||| ||||| || | | ||||| Sbjct 1938 TCCTTGGTCGACATAACGTGCAGTGTCATTGAAGACTCTAAGCATGGGGACGAGTCCATT 1879 Query 69813 AGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAG 69872 ||| |||||||||||| || ||||| || || | || || ||| || Sbjct 1878 AGAGGCACCATTTGTTCCTCTGATGTAACTGTCTGCAGCTCTGATCTTGTGGGCAGACAG 1819 Query 69873 ACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACC 69932 ||| || ||||| || ||||||||| ||||| || | || | ||||| || ||||| Sbjct 1818 ACCGATGCCTCCGGCAGATTTAGAGATGAGAGCGCACTGCTTTAGAGTGTCGTAGATACC 1759 Query 69933 CTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGT 69992 ||| || ||| || |||||| | ||| || ||| |||||| ||| | | || Sbjct 1758 CTCGATAGAATCCTCCTTCATGTCCAAAAGGAAGCAGGAAGACATCTGAGGTCTTGGTGT 1699 Query 69993 TCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTA 70052 || | || || | ||| || | ||||| ||||| | || || | ||||| || Sbjct 1698 GCCAGAGTTGAAAAGTGTGGGTGTGGCGTGTGTGAAAAACAGTTGGGATAACAGATGATA 1639 Query 70053 TGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCC 70091 |||||| || || | || || || | || ||||| || Sbjct 1638 TGTTTCGATGGCAGCTTTGATGTCTCTCTTGTGAATACC 1600 >seq1881 Length=25171 Score = 120 bits (132), Expect = 4e-22 Identities = 248/365 (68%), Gaps = 8/365 (2%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 ||| |||||||| |||||||| || |||||||| || ||||| || || | || Sbjct 18045 GCAAGCGAAGTCGCAATGTAGCCCTTCATCTCTTGATATGAATTCATTTGATTTTCCAAG 17986 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG-ATCCAGAAAAGA 39734 || ||| || || | ||| || |||||||| |||| |||| ||| | |||||||||| Sbjct 17985 ACCCTCCATGAGTCCCCTCTTCTTCAGCCAAAAGATGG-AGCAGAAGGAACCAGAAAAGA 17927 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATC---ATTAT 39791 |||| || || || || ||||| ||||| ||||||||||| || | || || | Sbjct 17926 AGATACCCTCCACAGCAGCAAAGGCAACGAGTCTCTCTCCAAAA---GAGTCCGAATCGT 17870 Query 39792 GTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCAT 39851 ||||| | |||||| || || ||||| | || ||||| || || ||||| | Sbjct 17869 TGATCCAGCGCATTGCCCACTCTGCCTTCTTTTGTATGCAAGGAATGTGATCGATAGCGT 17810 Query 39852 TAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACA 39911 || | || || || | |||| | ||| || || || | ||| || Sbjct 17809 GGAATAAGAGGTGCTTCTCTTTCTCATCTCGGATATACGTGTCGATCAGAAGAGAGTATG 17750 Query 39912 TTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAA 39971 |||| | ||| ||||| || || || |||||||| || ||||| ||||| || || | || Sbjct 17749 TTTCGGCATGTATGTTCTCTATGGCAATCTGAAAGCCATAAAAGCATCTGGCCTCTGGAA 17690 Query 39972 TTTGT 39976 | ||| Sbjct 17689 TCTGT 17685 >seq455 Length=31299 Score = 100 bits (110), Expect = 4e-16 Identities = 346/531 (65%), Gaps = 14/531 (3%) Strand=Plus/Plus Query 39445 CAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAG 39504 || |||||| || ||||| || || || | |||||| | |||||||| || || Sbjct 8396 CAGTCTATCGGCGACAAACTCGATATACTGTGTCATCAGGTTGGCGTTCATTCCAATCAG 8455 Query 39505 TTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTAT 39564 |||||| | |||||| || | |||||| || ||| || ||||| || || || Sbjct 8456 ACCAACTGGCAAAGCCTCGGTGACAAACTCCTTCTCGCACTCCACGGCGTCAAGGATGAT 8515 Query 39565 CGATGTTACTACCTCATCACTCGGTGGATGCAATAA-ATGTTTAAACATTAAGCAGGCGA 39623 | | || ||| | || ||| | || ||||| || | | |||||| | Sbjct 8516 CTTCTTCACGGTCTCTTGGCTGGGTTTCTCTTGTAGCATGTTGAAG-AGCAGGCAGGCAA 8574 Query 39624 AGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTG---AGTCCAG 39680 |||| || || || || || || | | ||| |||||||| || |||| || || | Sbjct 8575 AGTCGCAGTGGAGTCCTTCGTCGCGAGAAATAAATTCGTTTGA---TGTGGAAAGACCTG 8631 Query 39681 GCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGC 39740 |||| ||||| | ||| || | |||||| |||| | || || ||||| |||||||||| Sbjct 8632 GCATGAGACCTCTCTTCTTCAACCAAAAGATGGAACAGAAGGAACCAGAGAAGAAGATGC 8691 Query 39741 CTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTA--ACTTGTATCATTATGTATCCA 39798 | ||||| || || || || || || | |||||| | | | | | || || ||||| Sbjct 8692 CCTCTACGGCAGCGAAAGCGACGAGGCGTTCTCCGAAAGAGTCGGA--ATCATTGATCCA 8749 Query 39799 CTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 39858 | ||||| || || ||||| || | || || || || || |||| ||||| Sbjct 8750 GCGAAGAGCCCAGTCCGCCTTCTTTTTGATGCAGGGGATGTGGTCGATGGCATGGAAGAG 8809 Query 39859 ATAATG-TTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTG 39917 | || || || || || | || || ||||| || ||| ||| | || | Sbjct 8810 -CATTGCCTTCTCGGTGGGGTCCTTGATGTACGTGTCTATCAAGAGAGAATAAGTCTCAG 8868 Query 39918 AATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAG 39968 || ||||| ||||| || || ||||| || ||||| |||| || |||| Sbjct 8869 CGTGTATGTTCTCAATGGCAATTTGAAACCCATAAAAGCATCGCGCCTCAG 8919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686886672950280