Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1881 150 1e-31 seq455 138 9e-28 >seq1881 Length=25171 Score = 150 bits (166), Expect = 1e-31 Identities = 256/364 (70%), Gaps = 8/364 (2%) Strand=Plus/Plus Query 43928 CCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATG 43987 ||||| || |||| |||||||| ||||| ||||||||||| || || ||| | |||| Sbjct 17692 CCAGAGGCCAGATGCTTTTATGGCTTTCAGATTGCCATAGAGAACATACATGCCGAAACA 17751 Query 43988 TACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAAT 44047 ||| ||||||||| || ||||| ||| ||||| | | |||||||| | || || | Sbjct 17752 TACTCTCTTCTGATCGACACGTATATCCGAGATGAGAAAGAGAAGCACCTCTTATTCCAC 17811 Query 44048 GCGATAGA-AACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAA 44106 || || || ||| | | ||| || || | || ||||| ||||| | ||||| || Sbjct 17812 GCTATCGATCACATTCCTTGC-ATACAAAAGAAGGCAGAGTGGGCAATGCGCTGGATCAA 17870 Query 44107 TTCAAAT--GATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTC 44164 | | | || ||||||||||| |||| || || ||||| | |||||| || || ||| Sbjct 17871 --CGATTCGGACTCTTTTGGAGAGAGACTCGTTGCCTTTGCTGCTGTGGAGGGTATCTTC 17928 Query 44165 TTTTCAGGATCGTT-TGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTT 44223 ||||| || || || ||| |||| |||||| | ||||| | || | ||| || | Sbjct 17929 TTTTCTGGTTCCTTCTGC-TCCATCTTTTGGCTGAAGAAGAGGGGACTCATGGAGGGTCT 17987 Query 44224 GACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTT 44283 |||||||| || ||| | |||||||| |||||||||| || |||||| | Sbjct 17988 TGGAAAATCAAATGAATTCATATCAAGAGATGAAGGGCTACATTGCGACTTCGCTTGCCT 18047 Query 44284 GTTA 44287 ||| Sbjct 18048 CTTA 18051 >seq455 Length=31299 Score = 138 bits (152), Expect = 9e-28 Identities = 249/359 (69%), Gaps = 4/359 (1%) Strand=Plus/Minus Query 43928 CCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATG 43987 || || || ||||| ||||||||||||||||||||||| || || || || | || | Sbjct 8920 CCTGAGGCGCGATGCTTTTATGGGTTTCAAATTGCCATTGAGAACATACACGCTGAGACT 8861 Query 43988 TACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAA-GCATCGATTGTTTAA 44046 || ||| ||||||| ||||||||||| || |||||| ||| | | || | Sbjct 8860 TATTCTCTCTTGATAGACACGTACATCAAGGACCCCACCGAGAAGGCAATG-CTCTTCCA 8802 Query 44047 TGCGATAGA-AACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAA 44105 ||| || || ||| ||||| || ||| | || || |||||||| ||| ||||| | Sbjct 8801 TGCCATCGACCACATCCCCTGC-ATCAAAAAGAAGGCGGACTGGGCTCTTCGCTGGATCA 8743 Query 44106 ATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCT 44165 || || ||||| |||||||| || ||||| || || | || || ||||| |||| Sbjct 8742 ATGATTCCGACTCTTTCGGAGAACGCCTCGTCGCTTTCGCTGCCGTAGAGGGCATCTTCT 8683 Query 44166 TTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGA 44225 | || || || || |||| |||||||| ||||| ||||| | ||||| || | Sbjct 8682 TCTCTGGTTCCTTCTGTTCCATCTTTTGGTTGAAGAAGAGAGGTCTCATGCCAGGTCTTT 8623 Query 44226 CGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 | ||||| || || || ||| || ||||| | || ||||| ||||| ||| || Sbjct 8622 CCACATCAAACGAATTTATTTCTCGCGACGAAGGACTCCACTGCGACTTTGCCTGCCTG 8564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397443517024885