Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1441 138 1e-27 seq455 116 5e-21 seq1881 91.5 2e-13 >seq1441 Length=33442 Score = 138 bits (152), Expect = 1e-27 Identities = 532/835 (64%), Gaps = 68/835 (8%) Strand=Plus/Minus Query 111215 TCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTA 111274 || |||||| |||| || |||||||| ||||||| |||||| || || |||||||| Sbjct 2488 TCCTTGACAAACTTGGGCAGGGCGATGGATGCCAGATTGCACACCGCAACCTCATCCTGC 2429 Query 111275 TCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTT 111334 | |||||||| | ||| || || || |||||| | ||| || || || | |||| | Sbjct 2428 GCAGTGTACTCCATAATCTCGGTGCACAAGTTGCTAGACTTGATGGTTCCGAGGTTCTGT 2369 Query 111335 TGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTC 111394 ||||| ||||| ||||| || |||||||||||||| || || || || ||||| || Sbjct 2368 TGGTTGCTCTTTCTGTTGGCGGCGTCCTTGTAGAGCATATAAGGTGTTCCGGTCTCAATC 2309 Query 111395 TGTGATTTGAGAATAGCCTTCCAAACATCGGCGGC--TGGTACAATGGCGTTGGCCCGTC 111452 || || | | || | ||| | ||| ||| || | | | |||| ||| Sbjct 2308 TGAGAGTCCAAGATGGAGAACCACAGATCCTGGGCCTTGATCGTCTTTC--TGGCGAGTC 2251 Query 111453 CC---TCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCC---ACCGCGTCGG 111506 || || |||||||| |||| | ||||||||||| ||| ||| ||| || Sbjct 2250 CCGGTGTGGCTTCGTACTTGTTGTACAACTGCTCAAACTCCTCTCCCCAGACCTCGT-GG 2192 Query 111507 AGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCT 111566 ||| | || || | || |||||||| | ||||| | ||| ||||||| || | || Sbjct 2191 AGACCCTTG--GCTTCGTTGGGACAGAATAAGGACCAGTCTCCATCTTCCTCCACTCTCT 2134 Query 111567 TCATGAAAAGGTCTGGAATCCACAGGG-------ATGAAA----AGAGATCTCTACA--- 111612 |||| || || || || ||| | ||| |||||| || || | || | Sbjct 2133 TCATAAACAGATCGGGGATC--CTGGGAAACTCAATGAAATTCCAGTGAAATTTAGAATT 2076 Query 111613 ------CCGAG--------------------------CCTCTTCGTCACCTTGGTTGAGT 111640 | ||| |||||| | || || || | Sbjct 2075 ACGTACCAGAGGGCGTAAAAGAGGTCACGTGCTCTCCTCTCTTCTTTTCCGTGATTCTTT 2016 Query 111641 CGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGAT 111700 | | || | ||||| |||| || || ||||||||||| ||||| || || | | Sbjct 2015 CTGAGATCCAAAAACTCGGTGATGTCGGCATGCCATGGCTCCAGATAAACGGCAAAGGCA 1956 Query 111701 CCCTTTC---GACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGC 111757 ||||| | || || |||| | ||||| || || ||| | || || || | |||| Sbjct 1955 CCCTTCCTCTTACCACCTCCTTGGTCGACATAACGTGCAGTGTCATTGAAGACTCTAAGC 1896 Query 111758 ATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTG--GCTC 111815 || || | | |||| || ||||||||| || | || | | | || |||| Sbjct 1895 ATGGGGACGAGTCCATTAGAGGCACCATTTGTTCCTCTGAT--GTAACTGTCTGCAGCTC 1838 Query 111816 TCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCG 111875 | | | ||| || || || || || || | || ||||| | || |||| | Sbjct 1837 TGATCTTGTGGGCAGACAGACCGATGCCTCCGGCAGATTTAGAGATGAGAGCGCACTGCT 1778 Query 111876 TAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGG 111935 | ||||| | |||||||| | ||| || |||||||| || | | ||||||||| | Sbjct 1777 TTAGAGTGTCGTAGATACCCTCGATAGAATCCTCCTTCATGTCCAAAAGGAAGCAGGAAG 1718 Query 111936 ACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAA 111990 ||||||| ||||||||||| |||| ||||| || || ||||| ||||| |||| Sbjct 1717 ACATCTGAGGTCTTGGTGTGCCAGAGTTGAAAAGTGTGGGTGTGGCGTGTGTGAA 1663 >seq455 Length=31299 Score = 116 bits (128), Expect = 5e-21 Identities = 132/177 (75%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 122644 TTGAAGAGCTCCACGGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTT 122703 ||||||||| |||||| || |||||| || || || || ||||||| ||| ||| Sbjct 8556 TTGAAGAGCAGGCAGGCAAAGTCGCAGTGGAGTCCTTCGTCGCGAGAAATAAATTCGTTT 8615 Query 122704 GAGAAGCATAGACCTGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGAC 122763 || | | ||||||||||||||||| | ||||||||||||| | || | ||||| || Sbjct 8616 GATGTGGAAAGACCTGGCATGAGACCTCTCTTCTTCAACCAAAAGATGGAACAGAAGGAA 8675 Query 122764 CCGGAGAAGAAGATACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAG 122820 || ||||||||||| ||||| || || || || | |||||||| |||| ||| Sbjct 8676 CCAGAGAAGAAGATGCCCTCTACGGCAGCGAAAGCGACGAGGCGTTCTCCGAAAGAG 8732 >seq1881 Length=25171 Score = 91.5 bits (100), Expect = 2e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 122671 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCC 122730 || || || ||||||| || || | ||||||||| | ||||| |||||| ||| Sbjct 18029 TGTAGCCCTTCATCTCTTGATATGAATTCATTTGATTTTCCAAGACCCTCCATGAGTCCC 17970 Query 122731 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 122790 | |||||||| |||| | || | |||||| || || || |||||||||||||||||| Sbjct 17969 CTCTTCTTCAGCCAAAAGATGGAGCAGAAGGAACCAGAAAAGAAGATACCCTCCACAGCA 17910 Query 122791 GCAAACGCAA 122800 ||||| |||| Sbjct 17909 GCAAAGGCAA 17900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628011769519200