Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1441 125 9e-24 seq455 116 5e-21 >seq1441 Length=33442 Score = 125 bits (138), Expect = 9e-24 Identities = 295/443 (67%), Gaps = 7/443 (2%) Strand=Plus/Minus Query 119121 TCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTA 119180 |||||||| || |||| || || ||||| || ||||| || || || | | ||||| Sbjct 2009 TCCAAAAACTCGGTGATGTCGGCATGCCATGGCTCCAGATAAACGGCAAAGGCACCCTTC 1950 Query 119181 CG---ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGA 119237 | || ||| | |||| ||||| | |||||| | || || || | |||||| || Sbjct 1949 CTCTTACCACCTCCTTGGTCGACATAACGTGCAGTGTCATTGAAGACTCTAAGCATGGGG 1890 Query 119238 ATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTG--GCTCTGACAT 119295 | || |||| || |||||||| || | || | ||| || ||||||| | Sbjct 1889 ACGAGTCCATTAGAGGCACCATTTGTTCCTCTGAT--GTAACTGTCTGCAGCTCTGATCT 1832 Query 119296 CGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGAC 119355 |||| || ||| || || || || | || ||||| | ||||||| | | ||| Sbjct 1831 TGTGGGCAGACAGACCGATGCCTCCGGCAGATTTAGAGATGAGAGCGCACTGCTTTAGAG 1772 Query 119356 TGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTT 119415 || ||||||| || ||||| || || |||| | | | ||||||||| ||||| | Sbjct 1771 TGTCGTAGATACCCTCGATAGAATCCTCCTTCATGTCCAAAAGGAAGCAGGAAGACATCT 1712 Query 119416 GAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTGGG 119475 |||| || ||||| |||| |||||| || || ||||| ||||| |||| | ||||| Sbjct 1711 GAGGTCTTGGTGTGCCAGAGTTGAAAAGTGTGGGTGTGGCGTGTGTGAAAAACAGTTGGG 1652 Query 119476 ACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGA 119535 | | | | || || || | | | || |||||| | ||||||||||| || | Sbjct 1651 ATAACAGATGATATGTTTCGATGGCAGCTTTGATGTCTCTCTTGTGAATACCGACAGACA 1592 Query 119536 CCCGCATAAACATGTATTGGGGT 119558 | | | ||| | || ||||||| Sbjct 1591 CTCTGAGAAAGAGGTGTTGGGGT 1569 Score = 120 bits (132), Expect = 4e-22 Identities = 132/176 (75%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 118689 TCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTA 118748 || |||||| |||| || |||||||| || |||||||| ||||| | |||||||| Sbjct 2488 TCCTTGACAAACTTGGGCAGGGCGATGGATGCCAGATTGCACACCGCAACCTCATCCTGC 2429 Query 118749 TCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTT 118808 |||||||||| ||||| || ||||||||||| | ||| ||||| || | ||||| | Sbjct 2428 GCAGTGTACTCCATAATCTCGGTGCACAAGTTGCTAGACTTGATGGTTCCGAGGTTCTGT 2369 Query 118809 TGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTC 118864 || || |||| |||| || |||||||| ||||| || || || || ||||| Sbjct 2368 TGGTTGCTCTTTCTGTTGGCGGCGTCCTTGTAGAGCATATAAGGTGTTCCGGTCTC 2313 >seq455 Length=31299 Score = 116 bits (128), Expect = 5e-21 Identities = 200/286 (70%), Gaps = 11/286 (4%) Strand=Plus/Plus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| || |||||| || ||||| || || || | ||| || || | | ||||| Sbjct 8570 GGCAAAGTCGCAGTGGAGTCCTTCGTCGCGAGAAATAAATTCGTTTGATGTGGAAAGACC 8629 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 |||||||||||| | |||||||||||| || || | ||| || || |||||||||||||| Sbjct 8630 TGGCATGAGACCTCTCTTCTTCAACCAAAAGATGGAACAGAAGGAACCAGAGAAGAAGAT 8689 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGA--CTTTGTATCA 130192 ||||| || ||||| || | ||| || || | || ||| ||| | ||| ||| Sbjct 8690 GCCCTCTACGGCAGCGAAAGCGACGAGGCGTTCTCCGAAAGAGTCGGAATCATTG-ATCC 8748 Query 130193 AACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCA 130252 | | | | ||||| | |||||| || | ||| || |||| | | ||| || | Sbjct 8749 AGCGA----AGAGCCCAGTCCGCCTTCTTTTTGATGCAGGGGATGTGGTCGATGGCATGG 8804 Query 130253 AAGAG--TTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTAT 130296 ||||| || | ||| || | || || ||||||||| | ||||| Sbjct 8805 AAGAGCATTGC--CTTCTCGGTGGGGTCCTTGATGTACGTGTCTAT 8848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618415278656120