Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq455 131 2e-25 seq1441 107 2e-18 seq1881 98.7 1e-15 >seq455 Length=31299 Score = 131 bits (144), Expect = 2e-25 Identities = 205/286 (72%), Gaps = 13/286 (5%) Strand=Plus/Minus Query 94675 ATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCA--GCTCTTTGAAGCCATCCAA- 94731 ||||||| ||| || ||||| | |||||| ||| |||||| | |||||| | Sbjct 8848 ATAGACACGTACATCAAGGACCCCACCGAGAAG--GCAATGCTCTTCCATGCCATCGACC 8791 Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAG--T 94789 ||| | || || || ||||||| ||||| |||||| | | | | ||| ||| | | Sbjct 8790 ACA-TCCCCTGCATCAAAAAGAAGGCGGACTGGGCTCT----TCGCTGGAT-CAATGATT 8737 Query 94790 CGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTG 94849 | || || | || || ||| |||| || || || ||||| ||||||||||||| Sbjct 8736 CCGACTCTTTCGGAGAACGCCTCGTCGCTTTCGCTGCCGTAGAGGGCATCTTCTTCTCTG 8677 Query 94850 GTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 94909 |||||||||| | || | |||| | |||||| ||||||||||||||||||| | | | Sbjct 8676 GTTCCTTCTGTTCCATCTTTTGGTTGAAGAAGAGAGGTCTCATGCCAGGTCTTTCCACAT 8617 Query 94910 CCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 | ||||| |||| ||||| ||||| ||||||||| || ||||| Sbjct 8616 CAAACGAATTTATTTCTCGCGACGAAGGACTCCACTGCGACTTTGC 8571 >seq1441 Length=33442 Score = 107 bits (118), Expect = 2e-18 Identities = 270/408 (66%), Gaps = 7/408 (2%) Strand=Plus/Plus Query 104250 TCGGTATTCATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAG 104309 |||||||||| | |||||| | ||| | | || ||||| | | | |||||| Sbjct 1598 TCGGTATTCACAAGAGAGACATCAAAGCTGCCATCGAAACATATCATCTGTTATCCCAAC 1657 Query 104310 GTATGTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGT 104369 | |||| ||||| ||||| || || ||||| |||| ||||||||||| || |||| Sbjct 1658 TGTTTTTCACACACGCCACACCCACACTTTTCAACTCTGGCACACCAAGACCTCAGATGT 1717 Query 104370 CCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTA 104429 | ||||||||| | | || |||||||| || ||| | |||||||| | ||||| | Sbjct 1718 CTTCCTGCTTCCTTTTGGACATGAAGGAGGATTCTATCGAGGGTATCTACGACACTCTAA 1777 Query 104430 CGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGA 104489 | |||| || | ||||| || | || || || || || || ||| | | | Sbjct 1778 AGCAGTGCGCTCTCATCTCTAAATCTGCCGGAGGCATCGGTCTGTCTGCCCACAAGATCA 1837 Query 104490 GAGC--CAATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAAT 104547 |||| || | | | || | || ||||||||| || |||| | | || || Sbjct 1838 GAGCTGCAGACAGTTAC--ATCAGAGGAACAAATGGTGCCTCTAATGGACTCGTCCCCAT 1895 Query 104548 GCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCTGGGCGT---CGAAAGGG 104604 |||| | || || || | ||| || || ||||| | |||| || || | ||||| Sbjct 1896 GCTTAGAGTCTTCAATGACACTGCACGTTATGTCGACCAAGGAGGTGGTAAGAGGAAGGG 1955 Query 104605 ATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTT 104652 | | || || ||||| ||||||||||| || || |||| ||||| Sbjct 1956 TGCCTTTGCCGTTTATCTGGAGCCATGGCATGCCGACATCACCGAGTT 2003 >seq1881 Length=25171 Score = 98.7 bits (108), Expect = 1e-15 Identities = 123/168 (73%), Gaps = 7/168 (4%) Strand=Plus/Plus Query 94736 TTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAG--TCGCG 94793 |||| || || |||||||| || || ||||| ||| ||| | ||| | ||| Sbjct 17825 TTCCTTGCATACAAAAGAAGGCAGAGTGGGCAATGCGCTGGAT-----CAACGATTCGGA 17879 Query 94794 TTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTC 94853 || |||| ||| ||||| | || ||||| ||| |||||||||||||| |||||||| Sbjct 17880 CTCTTTTGGAGAGAGACTCGTTGCCTTTGCTGCTGTGGAGGGTATCTTCTTTTCTGGTTC 17939 Query 94854 CTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCT 94901 ||||||| | || | |||||| |||||| | || |||||| ||||| Sbjct 17940 CTTCTGCTCCATCTTTTGGCTGAAGAAGAGGGGACTCATGGAGGGTCT 17987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583242011711480