Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1441 168 7e-37 seq455 105 7e-18 >seq1441 Length=33442 Score = 168 bits (186), Expect = 7e-37 Identities = 526/818 (64%), Gaps = 65/818 (8%) Strand=Plus/Minus Query 79057 GATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCAC 79116 |||||||| |||||||| || ||| ||| | || ||| || || || |||||| Sbjct 2461 GATGCCAGATTGCACACCGCAACCTCATCCTGCGCAGTGTACTCCATAATCTCGGTGCAC 2402 Query 79117 AAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCC 79176 || || ||||||||||| |||| ||||| ||||||||||| ||| ||||||| Sbjct 2401 AAGTTGCTAGACTTGATGGTTCCGAGGTTCTGTTGGTTGCTCTTTCTGTTGGCGGCGTCC 2342 Query 79177 TTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGATG 79236 |||||| ||| || || || |||||||||| |||| | | | | | ||| | Sbjct 2341 TTGTAGAGCATATAAGGTGTTCCGGTCTCAATCTGAGAGTCCAAGATGGAGAACCACAGA 2282 Query 79237 TCCCGGGCCCGGA-CAACCTTCTTGTACCGA--CCCTGT---GCGACGTACGTCCGGTAC 79290 ||| ||||| || | | |||| | ||| ||| || || ||||| | |||| Sbjct 2281 TCCTGGGCCTTGATCGTCTTTCTGG---CGAGTCCCGGTGTGGCTTCGTACTTGTTGTAC 2225 Query 79291 AACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATC 79350 |||| | || |||| || |||| ||| | || ||| | |||| || || | Sbjct 2224 AACTGCTCAAACTCCTCTCCCCAGACCTCGTGGAGACCCTTGGCTTCGTTGGGACAGAAT 2165 Query 79351 AGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGAT---------- 79400 | | |||||| | || | ||| || ||| ||| || || || ||||| Sbjct 2164 AAGGACCAGTCTCCATCTTCCTCCACTCTCTTCATAAACAGATCGGGGATCCTGGGAAAC 2105 Query 79401 ----------------------------------CCACAGGGCCGTGAAGAGGTCGCGGC 79426 ||| ||||| |||||||| || Sbjct 2104 TCAATGAAATTCCAGTGAAATTTAGAATTACGTACCAGAGGGCGTAAAAGAGGTCACGTG 2045 Query 79427 AACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGT 79486 | | |||| || | || || ||| | || || | ||| || |||||||||| | Sbjct 2044 CTCTCCTCTCTTCTTTTCCGTGATTCTTTCTGAGATCCAAAAACTCGGTGATGTCGGCAT 1985 Query 79487 GCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGT 79546 |||| ||||||||||| | ||| || | |||||| | ||| || || || |||| ||| | Sbjct 1984 GCCATGGCTCCAGATAAACGGCAAAGGCACCCTTCCTCTTACCACCTCCTTGGTCGACAT 1925 Query 79547 ACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCG 79606 | || || |||| ||||| |||| |||||||| |||| || | | | | || || | Sbjct 1924 AACGTGCAGTGTCATTGAAGACTCTAAGCATGGGGACGAGTCCATTAGAGGCACCATTTG 1865 Query 79607 TCCCGTTGATTCGTGTACCGCTC----GCCCGAATGTT-CGAGCAGTGGATTCCGATGCC 79661 | || ||| |||| | || || | || || | |||| | |||||||| Sbjct 1864 TTCCTCTGA----TGTAACTGTCTGCAGCTCTGATCTTGTGGGCAG-ACAGACCGATGCC 1810 Query 79662 CCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGA 79721 |||| | || |||||| | ||||||| ||| || || |||||||| |||||||| || Sbjct 1809 TCCGGCAGATTTAGAGATGAGAGCGCACTGCTTTAGAGTGTCGTAGATACCCTCGATAGA 1750 Query 79722 GTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGG-GTTGTTCGTACCGGCGT 79780 || |||||||| | | ||||||||| |||||||| || ||| | || || | || Sbjct 1749 ATCCTCCTTCATGTCCAAAAGGAAGCAGGAAGACATCTGAGGTCTTGGT-GTGCCAGAGT 1691 Query 79781 TGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGG 79818 |||| || || || || ||||| ||||| ||| |||| Sbjct 1690 TGAAAAGTGTGGGTGTGGCGTGTGTGAAAAACAGTTGG 1653 Score = 116 bits (128), Expect = 4e-21 Identities = 525/835 (63%), Gaps = 59/835 (7%) Strand=Plus/Plus Query 19192 GTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGAACAAC-CCGCAGATGT 19250 ||| ||||| ||||| || || || ||||||||| | || || | ||| || ||||||| Sbjct 1659 GTTTTTCACACACGCCACACCCACACTTTTCAACTCTGGCAC-ACCAAGACCTCAGATGT 1717 Query 19251 CGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCA 19310 | ||| ||||| ||| |||||||| || || ||||| |||||||| || || | Sbjct 1718 CTTCCTGCTTCCTTTTGGACATGAAGGAGGATTCTATCGAGGGTATCTACGACACTCTAA 1777 Query 19311 AGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATCCACTGCTCG-AATATC 19369 || ||||||| | |||||| || | |||| || ||||| | |||| | || ||| Sbjct 1778 AGCAGTGCGCTCTCATCTCTAAATCTGCCGGAGGCATCGGTCTGT-CTGCCCACAAGATC 1836 Query 19370 CGGTC----GAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGACGGTATCGTCCC 19425 | | || | |||| ||| || || || || | | | || ||||||| Sbjct 1837 AGAGCTGCAGACAGTTACA----TCAGAGGAACAAATGGTGCCTCTAATGGACTCGTCCC 1892 Query 19426 AATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGGCAAACGCAA 19485 ||||| | |||||||| |||| || | || ||| |||| || || || || | || Sbjct 1893 CATGCTTAGAGTCTTCAATGACACTGCACGTTATGTCGACCAAGGAGGTGGTAAGAGGAA 1952 Query 19486 GGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTCCTCGAACT 19545 ||| | || ||| | || || ||||||||||| || ||| ||| || || | || || Sbjct 1953 GGGTGCCTTTGCCGTTTATCTGGAGCCATGGCATGCCGACATCACCGAGTTTTTGGATCT 2012 Query 19546 GCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTC-ACGGCCTT----- 19599 | ||| || || | || |||| | | || |||||||| ||| ||| Sbjct 2013 CAGAAAGAATCACGGAAAAGAAGAGAGGAGAGCACGTGACCTCTTTTACGCCCTCTGGTA 2072 Query 19600 --------------------------------GT------GGATTCCGGACCTATTCATG 19621 || |||| || || || || ||| Sbjct 2073 CGTAATTCTAAATTTCACTGGAATTTCATTGAGTTTCCCAGGATCCCCGATCTGTTTATG 2132 Query 19622 GAGAAGGTTGAGAAGGACGAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTA 19681 ||| || ||| | || | ||| ||| | | | || || ||||| | || || Sbjct 2133 AAGAGAGTGGAGGAAGATGGAGACTGGTCCTTATTCTGTCCCAACGAAGCCAAGGGTCTC 2192 Query 19682 CCCGACGTCTACGGCGAGGCGTTCAATGAGTTGTACCGGACTTACGTAGCC---CAGGGC 19738 | ||| |||| || |||| ||| | |||||||| | |||| |||| | ||| Sbjct 2193 CACGAGGTCTGGGGAGAGGAGTTTGAGCAGTTGTACAACAAGTACGAAGCCACACCGGGA 2252 Query 19739 CGGTTCAAGAAGGTGGTCCGGGCCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTC 19798 | || ||| | || ||||| ||| | ||| | | || | | ||| | Sbjct 2253 CTCGCCAGAAAGACGATCAAGGCCCAGGATCTGTGGTTCTCCATCTTGGACTCTCAGATT 2312 Query 19799 GAGACCGGCACACCGTACATGTGCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAG 19858 |||||||| ||||| || ||| ||||||||||||||| ||| ||| || || || Sbjct 2313 GAGACCGGAACACCTTATATGCTCTACAAGGACGCCGCCAACAGAAAGAGCAACCAACAG 2372 Query 19859 AACATCGGCGCGATCAAGTCGTCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCG 19918 ||| |||| | |||||||| |||| |||| || || || |||||| | || | Sbjct 2373 AACCTCGGAACCATCAAGTCTAGCAACTTGTGCACCGAGATTATGGAGTACACTGCGCAG 2432 Query 19919 GACGAGACTGCCGTGTGTAATCTGGCGTCCCTGTGCCTGCCGACTTTCGTCAAGG 19973 || ||| ||| ||||| |||||||| ||| | |||||| | || ||||||| Sbjct 2433 GATGAGGTTGCGGTGTGCAATCTGGCATCCATCGCCCTGCCCAAGTTTGTCAAGG 2487 >seq455 Length=31299 Score = 105 bits (116), Expect = 7e-18 Identities = 204/297 (69%), Gaps = 8/297 (3%) Strand=Plus/Minus Query 59826 ATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAG 59885 || ||| | ||||| || || ||| |||| || | || ||||||| || |||||| Sbjct 8875 ATACACGCTGAGACTTATTCTCTCTTGATAGACACGTACATCAAGGACCCCACCGAGAAG 8816 Query 59886 GCTGGTCTGTTCCGTGCCATAGAG-ACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGC 59944 || || |||| |||||| || || ||||| ||| | ||| | || || || ||||| Sbjct 8815 GCAATGCTCTTCCATGCCATCGACCACATCCCCTGCA-TCAAAAAGAAGGCGGACTGGGC 8757 Query 59945 CATGCAGTGGATGAGTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGT 60004 | | ||||| | | | | || || | | |||| ||| | ||||| || ||| Sbjct 8756 TCTTCGCTGGATCAATGATTCCGACTCTTTCGGAGAACGCCTCGTCGCTTTCGCTGCCGT 8697 Query 60005 GGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCT 60064 || || |||||||||||||| || |||||| | || || ||| | || ||| | || || Sbjct 8696 AGAGGGCATCTTCTTCTCTGGTTCCTTCTGTTCCATCTTTTGGTTGAAGAAGAGAGGTCT 8637 Query 60065 CATGCCGGGCCTGAGTTTC---TCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 |||||| || || || | || ||||| | ||||| || ||||| || ||||| Sbjct 8636 CATGCCAGGTCT---TTCCACATCAAACGAATTTATTTCTCGCGACGAAGGACTCCA 8583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548507130644880