Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1441 158 1e-33 seq455 132 5e-26 seq1881 87.8 2e-12 >seq1441 Length=33442 Score = 158 bits (174), Expect = 1e-33 Identities = 277/399 (69%), Gaps = 6/399 (2%) Strand=Plus/Plus Query 53273 TTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCAC--CCTCAGATGTCGA 53330 || || |||||||| || || || |||||| |||| || | || ||||||||||| Sbjct 1663 TTCACACACGCCACACCCACACTTTTCAACTCTGGCAC--ACCAAGACCTCAGATGTCTT 1720 Query 53331 GCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGG 53390 ||||||||| ||| |||||||| || || ||||| || |||||||| || || ||| Sbjct 1721 CCTGCTTCCTTTTGGACATGAAGGAGGATTCTATCGAGGGTATCTACGACACTCTAAAGC 1780 Query 53391 AGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTC-GAACGTCCGT 53449 |||| || | |||||| || | | || || |||||| | |||| | || || | Sbjct 1781 AGTGCGCTCTCATCTCTAAATCTGCCGGAGGCATCGGTCT-GTCTGCCCACAAGATCAGA 1839 Query 53450 GCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTC 53509 || | || |||| || || || || | | | ||||| |||| || ||||| Sbjct 1840 GCTGCAGACAGTTACATCAGAGGAACAAATGGTGCCTCTAATGGACTCGTCCCCATGCTT 1899 Query 53510 CGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCG 53569 | |||||||| |||| || || || ||| |||| || ||||| ||| | ||||| | Sbjct 1900 AGAGTCTTCAATGACACTGCACGTTATGTCGACCAAGGAGGTGGTAAGAGGAAGGGTGCC 1959 Query 53570 TTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTG 53629 || ||| | || || ||||| ||||| |||||||| | |||||| | || || | | Sbjct 1960 TTTGCCGTTTATCTGGAGCCATGGCATGCCGACATCACCGAGTTTTTGGATCTCAGAAAG 2019 Query 53630 AATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTT 53668 ||||| || | ||||||| | | |||||||| ||| Sbjct 2020 AATCACGGAAAAGAAGAGAGGAGAGCACGTGACCTCTTT 2058 >seq455 Length=31299 Score = 132 bits (146), Expect = 5e-26 Identities = 193/267 (72%), Gaps = 8/267 (3%) Strand=Plus/Plus Query 74784 ATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATG 74843 || ||||| || || ||||| || ||||| || || | ||||||||||||||||||| Sbjct 8604 ATAAATTCGTTTGATGTGGAAAGACCTGGCATGAGACCTCTCTTCTTCAACCAAAAGATG 8663 Query 74844 GCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGC 74903 | ||||||||||||| |||||||||||| || || || || ||||| ||||||| Sbjct 8664 GAACAGAAGGAACCAGAGAAGAAGATGCCCTCTACGGCAGCGAAAGCGACGAGGCGTTCT 8723 Query 74904 GCGAACG-GT--GCATCGGAAGTCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACC 74960 |||| | || | ||| | | ||||| ||||||| || || || ||||| Sbjct 8724 CCGAAAGAGTCGGAATC---ATTGATCCAGCGAAGAGCCCAGTCCGCCTTCTTTTTGA-T 8779 Query 74961 GCAGGGACAGT-ATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAG 75019 |||||| || ||||| || |||||||| |||||||||| ||| ||||||| | Sbjct 8780 GCAGGGGATGTGGTCGATGGCATGGAAGAGCATTGCCTTCTCGGTGGGGTCCTTGATGTA 8839 Query 75020 CTTGTCAATCATAAGTGAGTACGTCTC 75046 | |||| |||| || || || ||||| Sbjct 8840 CGTGTCTATCAAGAGAGAATAAGTCTC 8866 >seq1881 Length=25171 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 ||||||||||| ||| |||||||| || ||| || ||| ||||| | |||| Sbjct 18023 CCTTCATCTCTTGATATGAATTCATTTGATTTTCCAAGACCCTCCATGAGTCCCCTCTTC 17964 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 |||| ||||||||||| |||||||||||| |||||||| || || ||| |||||| Sbjct 17963 TTCAGCCAAAAGATGGAGCAGAAGGAACCAGAAAAGAAGATACCCTCCACAGCAGCAAAG 17904 Query 74889 GCGACAAG 74896 || || || Sbjct 17903 GCAACGAG 17896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547198372804600