Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq1564 84.2 2e-11 >seq1564 Length=26684 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| | || | ||| | || || ||| ||| || || ||||| || || | Sbjct 12052 CCTCCTCTGAGACGGAGCACAAGGTGAAGAGTGGACTCCTTCTGGATATTGTAGTCAGAG 11993 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || |||| || ||||| || || || || || || | ||| ||||||| ||| Sbjct 11992 AGAGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATGAGTCTCTGTTGGTCGGGGGGG 11933 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCAC 39236 | | ||| ||||| ||| || |||| ||| | | | || ||| |||||||| Sbjct 11932 ATTCCCTCCTTGTCTTGGATCTTAGCCTTGA-CGTTGTCGATGGTGTCGGAGGACTCCAC 11874 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||||| | || || || || || || |||||||||||||| Sbjct 11873 TTCCAAAGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATTTGCAT 11826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429532109180801