Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1766 111 1e-19 seq593 111 1e-19 seq717 109 4e-19 seq2313 105 5e-18 seq343 93.3 3e-14 seq1239 91.5 1e-13 >seq1766 Length=5059 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||||||||| || | || ||||| || ||||| |||||||| || | | Sbjct 4937 AATGCAGATTTTCGTTAAGACTTTGACTGGAAAGACAATCACCCTCGAAGTGGAGAGCTC 4878 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || | ||||| || || ||||| || || | || || ||||| Sbjct 4877 AGACACCATCGACAATGTAAAAGCCAAGATACAAGACAAGGAGGGAATCCCACCCGATCA 4818 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | | || || ||||| || ||| | || || | |||||| | |||| ||||| Sbjct 4817 ACAGAGACTCATTTTCGCCGGAAAGCAATTAGAGGATGGACGCACACTTAGCGACTACAA 4758 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || ||||| ||||| || | || ||||||||| | | |||||||| Sbjct 4757 TATTCAAAAGGAGTCTACTCTCCACTTAGTTTTACGTCTCAGAGGAGGA 4709 >seq593 Length=28782 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||| || |||||||| || || || ||||| || ||||| |||||||| || Sbjct 16337 AACATGCAAATCTTCGTTAAGACACTAACTGGAAAGACAATCACACTCGAAGTGGAGAGT 16278 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | || | |||| || || ||||| ||||| | || || ||| Sbjct 16277 TCAGACACAATCGATAATGTAAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCCGAT 16218 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 |||||| | | || || ||||| || || ||||||||| |||||||| |||||||| Sbjct 16217 CAACAGAGACTCATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGCACTTTGAGCGATTAC 16158 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 ||||| || || ||||| || | ||||| || ||| Sbjct 16157 AACATCCAGAAGGAGTCTACTCTCCATTTGGTATTA 16122 Score = 95.1 bits (104), Expect = 8e-15 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| || || | || ||||| || ||||| |||||||| || | Sbjct 15879 AATGCAGATTTTCGTCAAGACTTTGACAGGAAAGACAATCACCCTCGAAGTAGAGAGTTC 15820 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 |||||| | || ||| | || | || ||| ||||| ||||| | || || |||| Sbjct 15819 AGACACTATAGATAATGTGAAGGC-CAAGATTCAAGACAAGGAAGGAATCCCACCCGATC 15761 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 ||||| | | || |||||||| || || || || |||| ||| ||| | ||| |||| Sbjct 15760 AACAGAGACTCATCTTTGCCGGAAAGCAGCTTGAGGACGGACGTACTCTTTCCGACTACA 15701 Query 23789 ACATACAAAAAGAGTCCAC 23807 | || || || ||||| || Sbjct 15700 ATATCCAGAAGGAGTCTAC 15682 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || ||||| ||||| || || || ||||| | ||||| || ||| | Sbjct 15650 ATGCAGATTTTTGTCAAAACTCTCACCGGCAAGACCATCACCTTAGAAGTAGAATCCTCA 15591 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| | || ||| |||| | || ||| ||||| ||||| | || || || || Sbjct 15590 GATACTATCGACAATGTTAAGGC-CAAGATTCAAGACAAGGAAGGAATCCCTCCCGACCA 15532 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | | || |||||||| || || || || |||| | ||| | || ||||| Sbjct 15531 ACAGAGACTCATTTTTGCCGGAAAGCAGCTTGAGGACGGCAGAACTCTTTCTGACTACAA 15472 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||| || || Sbjct 15471 CATCCAGAAAGAATCTAC 15454 >seq717 Length=13837 Score = 109 bits (120), Expect = 4e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| || |||||||| ||||| || || ||| | ||||| || ||| Sbjct 393 AACATGCAGATTTTCGTAAAGACCCTCACAGGAAAGACTATTACTTTGGAAGTAGAGTCC 334 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | || | | || || ||| ||||| ||||| | || || ||| Sbjct 333 TCCGACACCATCGATAACGTCAAGGCCAAGATTCAAGACAAGGAAGGAATCCCTCCCGAT 274 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 |||||| | || || || ||||| || || | || || | ||||| | ||| ||| Sbjct 273 CAACAGAGATTGATCTTCGCCGGAAAGCAGTTAGAGGATGGGCGCACCCTCTCCGACTAC 214 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| |||||||||||||| Sbjct 213 AACATCCAAAAAGAGTCCAC 194 >seq2313 Length=44285 Score = 105 bits (116), Expect = 5e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| || |||||||| ||||| || ||||| ||||||||||| || | Sbjct 27644 AATGCAGATCTTCGTAAAGACCCTCACTGGAAAGACAATCACCCTCGAAGTTGAATCTTC 27703 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || | | || || || ||||| ||||| | || ||||| || Sbjct 27704 AGATACAATAGACAACGTCAAGGCTAAGATCCAAGACAAGGAAGGCATTCCACCAGACCA 27763 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | | || || ||||| || || || || |||| | | || | |||| ||||| Sbjct 27764 ACAGAGACTCATCTTCGCCGGAAAGCAGCTAGAGGACGGAAGAACCCTCAGCGACTACAA 27823 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| |||||||| Sbjct 27824 CATTCAAAAGGAGTCCAC 27841 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||||||||| || || || | || ||||| || |||||| | ||||| || | Sbjct 27414 AACATGCAGATTTTTGTAAAGACTTTAACCGGAAAGACCATCACTTTGGAAGTCGAGAGC 27473 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | || | |||| || || || || || || |||| ||||| Sbjct 27474 TCAGACACCATCGACAATGTAAAGGCCAAGATCCAAGATAAGGAGGGAATACCCCCAGAC 27533 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 |||||| | | || || || || || || ||||| || | | | || | |||| ||| Sbjct 27534 CAACAGAGACTCATCTTCGCTGGAAAGCAGCTGGAGGATGGAAGAACCCTCAGCGACTAC 27593 Query 23788 AACATACAAAAAGAGTCCACA 23808 |||||||| |||||||||||| Sbjct 27594 AACATACAGAAAGAGTCCACA 27614 >seq343 Length=26413 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| || || | || ||||| || ||||| |||||||| || | Sbjct 75 AATGCAGATTTTCGTCAAGACTTTGACTGGAAAGACAATCACCCTCGAAGTAGAGAGTTC 134 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | || | ||||| || || ||||||||||| | || || ||||| Sbjct 135 AGACACTATCGACAACGTAAAAGCCAAGATACAAGACAAAGAAGGCATCCCACCCGATCA 194 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | | || |||||||| || || || || || | || || | || || || Sbjct 195 ACAGAGACTCATTTTTGCCGGAAAGCAGCTCGAGGATGGCCGTACCCTCTCAGACTATAA 254 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| || || ||||| || | ||| | ||| | | ||| |||||||| Sbjct 255 CATTCAGAAGGAGTCTACTCTTCATCTCGTTCTTCGCTTGAGAGGAGGA 303 >seq1239 Length=29077 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || || ||||| || ||||| || |||||| | || || || | | Sbjct 23343 AATGCAGATCTTTGTCAAGACCCTGACCGGAAAGACCATCACTTTGGAGGTGGAGAGCTC 23284 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || | | || || || ||||| |||||| | || || || || Sbjct 23283 AGACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCCGACCA 23224 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | | || ||||| || || || ||||||| | |||||| | |||||||| Sbjct 23223 ACAGAGACTCATCTTTGCTGGAAAGCAGTTGGAAGATGGCCGCACTCTCTCAGATTACAA 23164 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || || ||||| || | || || || || || || |||||||| Sbjct 23163 CATTCAGAAGGAGTCTACTCTTCACTTGGTGTTGAGATTACGAGGAGG 23116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337998984069116