Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq2030 87.8 1e-12 seq637 87.8 1e-12 >seq2030 Length=13636 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 26998 ACTGCCATCCTCATCCTTATGGCGGGATGAGGGTCGTAACCCTCCAGGGAGAAATCCTCT 27057 || |||||| |||| |||| | |||||| | ||| || |||| || | || Sbjct 12833 ACGGCCATCTCCATCGCAATGGTGCCATGAGGTTTGTAGTCCACCAGTTCAAAGTGTTCC 12774 Query 27058 GCCTTAAAGTCGTCCAGGCTCTCCACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTG 27117 ||| || || || | | ||| ||| || || | | | || ||||| || ||||| Sbjct 12773 ATCTTGAAATCATCAATGTTCTTCACGCTGGGGTCCACCTTGAGAGTGGGGAAAGGTCTC 12714 Query 27118 GGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCT 27177 ||||| || || || || || ||||| || || ||||| | | |||||| ||||||||| Sbjct 12713 GGCTCTCTTTCTAGTTGGGTTTTCAGAGGCTCGACGTGGTTCGTGTAGACATGAGCGTCT 12654 Query 27178 CCCAGGGTGTGGACAAACTCTCC 27200 ||||| ||||| ||||| || || Sbjct 12653 CCCAGAGTGTGCACAAAATCACC 12631 >seq637 Length=38019 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 26998 ACTGCCATCCTCATCCTTATGGCGGGATGAGGGTCGTAACCCTCCAGGGAGAAATCCTCT 27057 || |||||| |||| |||| | |||||| | ||| || |||| || | || Sbjct 11722 ACGGCCATCTCCATCGCAATGGTGCCATGAGGTTTGTAGTCCACCAGTTCAAAGTGTTCC 11663 Query 27058 GCCTTAAAGTCGTCCAGGCTCTCCACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTG 27117 ||| || || || | | ||| ||| || || | | | || ||||| || ||||| Sbjct 11662 ATCTTGAAATCATCAATGTTCTTCACGCTGGGGTCCACCTTGAGAGTGGGGAAAGGTCTC 11603 Query 27118 GGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCT 27177 ||||| || || || || || ||||| || || ||||| | | |||||| ||||||||| Sbjct 11602 GGCTCTCTTTCTAGTTGGGTTTTCAGAGGCTCGACGTGGTTCGTGTAGACATGAGCGTCT 11543 Query 27178 CCCAGGGTGTGGACAAACTCTCC 27200 ||||| ||||| ||||| || || Sbjct 11542 CCCAGAGTGTGCACAAAATCACC 11520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369495594818087