Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1881 114 2e-20 seq1441 114 2e-20 >seq1881 Length=25171 Score = 114 bits (126), Expect = 2e-20 Identities = 244/363 (67%), Gaps = 6/363 (2%) Strand=Plus/Minus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || || || || ||||| || ||||||||||| || ||||| || || | ||| Sbjct 18044 CAAGCGAAGTCGCAATGTAGCCCTTCATCTCTTGATATGAATTCATTTGATTTTCCAAGA 17985 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAAT 48260 || ||| ||||| | || || |||||||| || | ||| || ||||||||||| Sbjct 17984 CCCTCCATGAGTCCCCTCTTCTTCAGCCAAAAGATGGAGCAGAAGGAACCAGAAAAGAAG 17925 Query 48261 ATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTG---GCTTCGTTGTGT 48317 || || || || || ||||| || ||||||||||| || | | |||||| Sbjct 17924 ATACCCTCCACAGCAGCAAAGGCAACGAGTCTCTCTCCAAAAGAGTCCGAATCGTTG--- 17868 Query 48318 ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 48377 ||||| || |||||| || |||||||| | || ||||| || || ||||| | Sbjct 17867 ATCCAGCGCATTGCCCACTCTGCCTTCTTTTGTATGCAAGGAATGTGATCGATAGCGTGG 17808 Query 48378 AAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATT 48437 || | | || || || || |||| | || || || || | |||| || || Sbjct 17807 AATAAGAGGTGCTTCTCTTTCTCATCTCGGATATACGTGTCGATCAGAAGAGAGTATGTT 17748 Query 48438 TCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATC 48497 |||| || || || || || || |||||||| || ||||| ||||| || |||| ||| Sbjct 17747 TCGGCATGTATGTTCTCTATGGCAATCTGAAAGCCATAAAAGCATCTGGCCTCTGGAATC 17688 Query 48498 TGT 48500 ||| Sbjct 17687 TGT 17685 >seq1441 Length=33442 Score = 114 bits (126), Expect = 2e-20 Identities = 492/780 (63%), Gaps = 61/780 (8%) Strand=Plus/Minus Query 77664 ACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCA 77723 |||||| || || || || ||||| ||||| || || || ||||||| | | ||| Sbjct 2482 ACAAACTTGGGCAGGGCGATGGATGCCAGATTGCACACCGCAACCTCAT---CCTGCGCA 2426 Query 77724 ---TATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGG 77780 || | || |||||||| || | || ||| | ||||| || || || || |||||| Sbjct 2425 GTGTACTCCATAATCTCGGTGCACAAGTTGCTAGACTTGATGGTTCCGAGGTTCTGTTGG 2366 Query 77781 TTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGT 77840 ||||||||| | ||| | |||||| || || ||| | || || ||||| |||||||| Sbjct 2365 TTGCTCTTTCTGTTGGCGGCGTCCTTGTAGAGCATATAAGGTGTTCCGGTCTCAATCTGA 2306 Query 77841 GATTCGATAATAGATTTCCAGACGACTCT-AGCTTTTATCATAGATTTGTATCGCCTCTC 77899 || || | || || ||| | || || || || ||| | ||| | || || | Sbjct 2305 GAGTCCAAGATGGAGAACCACA-GATCCTGGGCCTTGATCGT--CTTTCTGGCGAGTCCC 2249 Query 77900 TCT-----TTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCA-A 77953 | ||| || | | || | | | ||||| || |||||||| || || | | | Sbjct 2248 GGTGTGGCTTCGTACTTGTTGTACAACTGCTCAAACTCCTCTCCCCAGACCTCGTGGAGA 2189 Query 77954 TCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCAT 78013 || ||| ||| || || || | || |||||||| |||||||||| |||| ||||| Sbjct 2188 CCCTTGGC-TTCGTTGGGACAGAATAAGGACCAGTCTCCATCTTCCTCCACTCTCTTCAT 2130 Query 78014 AAAGAGATCAGGTATCC-----------AT--------AGAGCAAT-------------- 78040 ||| ||||| || |||| || || | ||| Sbjct 2129 AAACAGATCGGGGATCCTGGGAAACTCAATGAAATTCCAGTGAAATTTAGAATTACGTAC 2070 Query 78041 -----------AAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGA 78089 ||| || || || | ||| ||||| ||||| ||||||| | ||| Sbjct 2069 CAGAGGGCGTAAAAGAGGTCACGTGCTCTCCTCTCTTCTTTTCCGTGATTCTTTCTGAGA 2010 Query 78090 TCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGT 78149 || | |||||| | || || | ||||||||| || ||||| | || | | || Sbjct 2009 TCCAAAAACTCGGTGATGTCGGCATGCCATGGCTCCAGATAAACGGCAAAGGCACCCTTC 1950 Query 78150 CGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGA 78209 | ||| |||||| || || | ||| | || |||| ||| | ||||| | ||| || Sbjct 1949 CTCTTACCACCTCCTTGGTCGACATAACGTGCAGTGTCATTGAAGACTCTAAGCATGGGG 1890 Query 78210 ATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTA 78269 | | || ||||| | ||||||||||| || ||||| | || | || || Sbjct 1889 ACGAGTCCATTAGAGGCACCATTTGTTCCTCTGATGTAACTGTCTGCAGCTCTGATCTTG 1830 Query 78270 CTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTA 78329 || | || || ||||| || ||||| || |||||||| | || | || Sbjct 1829 TGGGCAGACAGACCGATGCCTCCGGCAGATTTAGAGATGAGAGCGCACTGCTTTAGAGTG 1770 Query 78330 TCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGA 78389 |||||||||||||| ||| || ||| |||||| | ||| || ||| |||||| ||| Sbjct 1769 TCGTAGATACCCTCGATAGAATCCTCCTTCATGTCCAAAAGGAAGCAGGAAGACATCTGA 1710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694646422981280