Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protostelium_20mycophagum_20[genbank_20GCA_5F002081555.1_202017-04- 06] 2,577 sequences; 39,717,957 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1441 145 1e-29 seq1881 113 6e-20 >seq1441 Length=33442 Score = 145 bits (160), Expect = 1e-29 Identities = 494/769 (64%), Gaps = 63/769 (8%) Strand=Plus/Minus Query 76271 AGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTA---GCATTGGCATATTGTATT 76327 || || || ||||| ||||| || || || ||||||| ||| || || | || Sbjct 2470 AGGGCGATGGATGCCAGATTGCACACCGCAACCTCATCCTGCGCAGTG---TACTCCATA 2414 Query 76328 ATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTG 76387 ||||| ||||| | || ||| ||||||| ||||| || || ||||||||||||||| || Sbjct 2413 ATCTCGGTGCACAAGTTGCTAGACTTGATGGTTCCGAGGTTCTGTTGGTTGCTCTTTCTG 2354 Query 76388 TTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATA 76447 || | |||||| || || | | | || ||||| || |||||||| || || | || Sbjct 2353 TTGGCGGCGTCCTTGTAGAGCATATAAGGTGTTCCGGTCTCAATCTGAGAGTCCAAGATG 2294 Query 76448 GATTTCCAGACGACTCTAG-CTTTTATTATAGATTTGTATCGCTTCTCTCT-----TTCA 76501 || ||| | || || | | || || | ||| | || || | | ||| Sbjct 2293 GAGAACCACA-GATCCTGGGCCTTGATCGTC--TTTCTGGCGAGTCCCGGTGTGGCTTCG 2237 Query 76502 TA-TTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTC 76560 || |||| | || ||| | ||||| || |||||||| || || | | ||| ||| Sbjct 2236 TACTTGT-TGTACAACTGCTCAAACTCCTCTCCCCAGACCTCGTGGAGACCCTTGGCTTC 2178 Query 76561 ATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGG 76620 || ||||| | || ||||| || |||||||||| || | |||||||| ||||| || Sbjct 2177 GTTGGGACAGAATAAGGACCAGTCTCCATCTTCCTCCACTCTCTTCATAAACAGATCGGG 2118 Query 76621 TATCC----------------AT---AGAGCAAT-------------------------A 76636 |||| || || | ||| | Sbjct 2117 GATCCTGGGAAACTCAATGAAATTCCAGTGAAATTTAGAATTACGTACCAGAGGGCGTAA 2058 Query 76637 AATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCC 76696 || || || || | ||| | ||||| ||||| ||||||| | ||||| | ||||| Sbjct 2057 AAGAGGTCACGTGCTCTCCTCTCTTCTTTTCCGTGATTCTTTCTGAGATCCAAAAACTCG 1998 Query 76697 ATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCT 76756 | || || | ||||||||| || ||||| | || | ||||| | ||| |||| Sbjct 1997 GTGATGTCGGCATGCCATGGCTCCAGATAAACGGCAAAGGCACCCTTCCTCTTACCACCT 1938 Query 76757 CCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTA 76816 || || || | ||| | ||||||| ||| | ||||| | ||| || | | || ||| Sbjct 1937 CCTTGGTCGACATAACGTGCAGTGTCATTGAAGACTCTAAGCATGGGGACGAGTCCATTA 1878 Query 76817 GATGTACCATTTGTTCCAGAAATATAACT-TCCACATGCACGAATATTACTAATAGATAG 76875 || | |||||||||||| || ||||| || || || | || || ||| || Sbjct 1877 GAGGCACCATTTGTTCCTCTGATGTAACTGTCTGCA-GCTCTGATCTTGTGGGCAGACAG 1819 Query 76876 GCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCC 76935 || || ||||| || ||||||||| ||||| || | || | ||||| ||||| || Sbjct 1818 ACCGATGCCTCCGGCAGATTTAGAGATGAGAGCGCACTGCTTTAGAGTGTCGTAGATACC 1759 Query 76936 CTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGA 76984 ||| ||| ||| ||| |||||| | ||| || ||| |||||| ||| Sbjct 1758 CTCGATAGAATCCTCCTTCATGTCCAAAAGGAAGCAGGAAGACATCTGA 1710 >seq1881 Length=25171 Score = 113 bits (124), Expect = 6e-20 Identities = 241/360 (67%), Gaps = 0/360 (0%) Strand=Plus/Minus Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689 || || || || ||||| || ||||||||||| || ||||| || || | || Sbjct 18044 CAAGCGAAGTCGCAATGTAGCCCTTCATCTCTTGATATGAATTCATTTGATTTTCCAAGA 17985 Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAAT 46749 || ||| ||||| | ||| || |||||||| || | ||| || ||||||||||| Sbjct 17984 CCCTCCATGAGTCCCCTCTTCTTCAGCCAAAAGATGGAGCAGAAGGAACCAGAAAAGAAG 17925 Query 46750 ATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGAATC 46809 || || || ||||| || || || || ||||||||||| || | | || | ||| Sbjct 17924 ATACCCTCCACAGCAGCAAAGGCAACGAGTCTCTCTCCAAAAGAGTCCGAATCGTTGATC 17865 Query 46810 CACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAG 46869 || | ||||| || ||||| || | || ||||| || || ||||| | || Sbjct 17864 CAGCGCATTGCCCACTCTGCCTTCTTTTGTATGCAAGGAATGTGATCGATAGCGTGGAAT 17805 Query 46870 AGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCT 46929 | | || || || | |||| | ||| || || || | |||| || |||| Sbjct 17804 AAGAGGTGCTTCTCTTTCTCATCTCGGATATACGTGTCGATCAGAAGAGAGTATGTTTCG 17745 Query 46930 GAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGT 46989 | ||| ||||| || || || |||||||| || ||||| ||||| || || | ||||||| Sbjct 17744 GCATGTATGTTCTCTATGGCAATCTGAAAGCCATAAAAGCATCTGGCCTCTGGAATCTGT 17685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712911434600640