Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angomonas_20deanei_20[genbank_20GCA_5F000442575.2_202013-07-31] 17,339 sequences; 34,103,807 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq15380 89.7 6e-13 seq10209 89.7 6e-13 seq6928 89.7 6e-13 >seq15380 Length=3290 Score = 89.7 bits (98), Expect = 6e-13 Identities = 187/279 (67%), Gaps = 0/279 (0%) Strand=Plus/Minus Query 54001 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 54060 ||||| || ||||| ||| || ||||| || || ||||| |||||||||||||||||||| Sbjct 1029 CATCAGCGTCCACTGTCCCTCCTCCTTGACACGCTTCATGAAGAGATCAGGAATCCAAAG 970 Query 54061 AGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 54120 || ||| ||||| | || | || ||||| || || || || || || || Sbjct 969 GGCGTAAAACAGATCGCGGGCACGTTGGTCCTCCTTACCGGTGTTTCGCTTCAGGCGGAC 910 Query 54121 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTT 54180 |||| | | | || | |||||||| || | ||| | || | | || || || Sbjct 909 GAACTCGAACACGTCGGCGTGCCACGGCTCGAGGTACACGGCGAAGGCACCCTTACGCTT 850 Query 54181 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 54240 || ||||| || | ||| | ||||||||||| | || | | ||| || | | Sbjct 849 ACCGCCACCCTGGTCCACGTAGCGGGCGGTGTTATTGAACACACGGAGCATGGGCACGAG 790 Query 54241 ACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCC 54279 ||| ||||| | ||| || || |||| ||| || || || Sbjct 789 ACCGTTGGAGGTACCGTTCGTACCGGCGATGTAACTACC 751 >seq10209 Length=2565 Score = 89.7 bits (98), Expect = 6e-13 Identities = 187/279 (67%), Gaps = 0/279 (0%) Strand=Plus/Minus Query 54001 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 54060 ||||| || ||||| ||| || ||||| || || ||||| |||||||||||||||||||| Sbjct 1202 CATCAGCGTCCACTGTCCCTCCTCCTTGACACGCTTCATGAAGAGATCAGGAATCCAAAG 1143 Query 54061 AGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 54120 || ||| ||||| | || | || ||||| || || || || || || || Sbjct 1142 GGCGTAAAACAGATCGCGGGCACGTTGGTCCTCCTTACCGGTGTTTCGCTTCAGGCGGAC 1083 Query 54121 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTT 54180 |||| | | | || | |||||||| || | ||| | || | | || || || Sbjct 1082 GAACTCGAACACGTCGGCGTGCCACGGCTCGAGGTACACGGCGAAGGCACCCTTACGCTT 1023 Query 54181 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 54240 || ||||| || | ||| | ||||||||||| | || | | ||| || | | Sbjct 1022 ACCGCCACCCTGGTCCACGTAGCGGGCGGTGTTATTGAACACACGGAGCATGGGCACGAG 963 Query 54241 ACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCC 54279 ||| ||||| | ||| || || |||| ||| || || || Sbjct 962 ACCGTTGGAGGTACCGTTCGTACCGGCGATGTAACTACC 924 >seq6928 Length=4025 Score = 89.7 bits (98), Expect = 6e-13 Identities = 187/279 (67%), Gaps = 0/279 (0%) Strand=Plus/Plus Query 54001 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 54060 ||||| || ||||| ||| || ||||| || || ||||| |||||||||||||||||||| Sbjct 2159 CATCAGCGTCCACTGTCCCTCCTCCTTGACACGCTTCATGAAGAGATCAGGAATCCAAAG 2218 Query 54061 AGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 54120 || ||| ||||| | || | || ||||| || || || || || || || Sbjct 2219 GGCGTAAAACAGATCGCGGGCACGTTGGTCCTCCTTACCGGTGTTTCGCTTCAGGCGGAC 2278 Query 54121 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTT 54180 |||| | | | || | |||||||| || | ||| | || | | || || || Sbjct 2279 GAACTCGAACACGTCGGCGTGCCACGGCTCGAGGTACACGGCGAAGGCACCCTTACGCTT 2338 Query 54181 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 54240 || ||||| || | ||| | ||||||||||| | || | | ||| || | | Sbjct 2339 ACCGCCACCCTGGTCCACGTAGCGGGCGGTGTTATTGAACACACGGAGCATGGGCACGAG 2398 Query 54241 ACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCC 54279 ||| ||||| | ||| || || |||| ||| || || || Sbjct 2399 ACCGTTGGAGGTACCGTTCGTACCGGCGATGTAACTACC 2437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593592918264720