Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angomonas_20deanei_20[genbank_20GCA_5F000442575.2_202013-07-31] 17,339 sequences; 34,103,807 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq15380 89.7 7e-13 seq10209 89.7 7e-13 seq6928 89.7 7e-13 >seq15380 Length=3290 Score = 89.7 bits (98), Expect = 7e-13 Identities = 187/279 (67%), Gaps = 0/279 (0%) Strand=Plus/Minus Query 66032 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 66091 ||||| || ||||| ||| || ||||| || || ||||| |||||||||||||||||||| Sbjct 1029 CATCAGCGTCCACTGTCCCTCCTCCTTGACACGCTTCATGAAGAGATCAGGAATCCAAAG 970 Query 66092 AGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 66151 || ||| | ||| | || | || ||||| || || || || || || || Sbjct 969 GGCGTAAAACAGATCGCGGGCACGTTGGTCCTCCTTACCGGTGTTTCGCTTCAGGCGGAC 910 Query 66152 GAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTT 66211 |||| | | | || |||||||| || | ||| | ||| | | || || || Sbjct 909 GAACTCGAACACGTCGGCGTGCCACGGCTCGAGGTACACGGCGAAGGCACCCTTACGCTT 850 Query 66212 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 66271 || ||||| || | ||| | ||||||||||| | || | | ||| || | | Sbjct 849 ACCGCCACCCTGGTCCACGTAGCGGGCGGTGTTATTGAACACACGGAGCATGGGCACGAG 790 Query 66272 ACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCC 66310 ||| ||||| ||||| || || |||| ||| || || || Sbjct 789 ACCGTTGGAGGTACCGTTCGTACCGGCGATGTAACTACC 751 >seq10209 Length=2565 Score = 89.7 bits (98), Expect = 7e-13 Identities = 187/279 (67%), Gaps = 0/279 (0%) Strand=Plus/Minus Query 66032 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 66091 ||||| || ||||| ||| || ||||| || || ||||| |||||||||||||||||||| Sbjct 1202 CATCAGCGTCCACTGTCCCTCCTCCTTGACACGCTTCATGAAGAGATCAGGAATCCAAAG 1143 Query 66092 AGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 66151 || ||| | ||| | || | || ||||| || || || || || || || Sbjct 1142 GGCGTAAAACAGATCGCGGGCACGTTGGTCCTCCTTACCGGTGTTTCGCTTCAGGCGGAC 1083 Query 66152 GAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTT 66211 |||| | | | || |||||||| || | ||| | ||| | | || || || Sbjct 1082 GAACTCGAACACGTCGGCGTGCCACGGCTCGAGGTACACGGCGAAGGCACCCTTACGCTT 1023 Query 66212 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 66271 || ||||| || | ||| | ||||||||||| | || | | ||| || | | Sbjct 1022 ACCGCCACCCTGGTCCACGTAGCGGGCGGTGTTATTGAACACACGGAGCATGGGCACGAG 963 Query 66272 ACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCC 66310 ||| ||||| ||||| || || |||| ||| || || || Sbjct 962 ACCGTTGGAGGTACCGTTCGTACCGGCGATGTAACTACC 924 >seq6928 Length=4025 Score = 89.7 bits (98), Expect = 7e-13 Identities = 187/279 (67%), Gaps = 0/279 (0%) Strand=Plus/Plus Query 66032 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 66091 ||||| || ||||| ||| || ||||| || || ||||| |||||||||||||||||||| Sbjct 2159 CATCAGCGTCCACTGTCCCTCCTCCTTGACACGCTTCATGAAGAGATCAGGAATCCAAAG 2218 Query 66092 AGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 66151 || ||| | ||| | || | || ||||| || || || || || || || Sbjct 2219 GGCGTAAAACAGATCGCGGGCACGTTGGTCCTCCTTACCGGTGTTTCGCTTCAGGCGGAC 2278 Query 66152 GAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTT 66211 |||| | | | || |||||||| || | ||| | ||| | | || || || Sbjct 2279 GAACTCGAACACGTCGGCGTGCCACGGCTCGAGGTACACGGCGAAGGCACCCTTACGCTT 2338 Query 66212 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 66271 || ||||| || | ||| | ||||||||||| | || | | ||| || | | Sbjct 2339 ACCGCCACCCTGGTCCACGTAGCGGGCGGTGTTATTGAACACACGGAGCATGGGCACGAG 2398 Query 66272 ACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCC 66310 ||| ||||| ||||| || || |||| ||| || || || Sbjct 2399 ACCGTTGGAGGTACCGTTCGTACCGGCGATGTAACTACC 2437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658030149272760